RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 ZSCAN10Q96SZ4 725 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-215ENST00000515516 UBAC1Q9BSL1 405 aa16.02■□□□□ 0.16
TCOF1-215ENST00000515516 ADD3Q9UEY8 706 aaKnown RBP16.02■□□□□ 0.16
TCOF1-215ENST00000515516 COL11A1P12107 1806 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-215ENST00000515516 RAD50Q92878 1312 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 PTPDC1A2A3K4 754 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 PQBP1O60828 265 aaKnown RBP16.01■□□□□ 0.15
TCOF1-215ENST00000515516 SNHG28P0DPA3 235 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 GSPT1P15170 499 aaKnown RBP16.01■□□□□ 0.15
TCOF1-215ENST00000515516 GJA9P57773 515 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 TRDNQ13061 729 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 BAATQ14032 418 aaPredicted RBP16.01■□□□□ 0.15
TCOF1-215ENST00000515516 LRIT3Q3SXY7 679 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 GNASQ5JWF2 1037 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 PNMA1Q8ND90 353 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 LRCH3Q96II8 777 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 MPHOSPH6Q99547 160 aaKnown RBP16.01■□□□□ 0.15
TCOF1-215ENST00000515516 AP5M1Q9H0R1 490 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 ZSWIM5Q9P217 1185 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 TRIOBPQ9H2D6 2365 aa16.01■□□□□ 0.15
TCOF1-215ENST00000515516 DCDC2CA8MYV0 355 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 SOX1O00570 391 aaPredicted RBP16■□□□□ 0.15
TCOF1-215ENST00000515516 CLTBP09497 229 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 GOLGA8HP0CJ92 632 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 CST5P28325 142 aaPredicted RBP16■□□□□ 0.15
TCOF1-215ENST00000515516 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 ANKS1AQ92625 1134 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 PDLIM7Q9NR12 457 aa16■□□□□ 0.15
TCOF1-215ENST00000515516 B4DLN1 442 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 DHX16O60231 1041 aaKnown RBP15.99■□□□□ 0.15
TCOF1-215ENST00000515516 ZEB2O60315 1214 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 CALML3P27482 149 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 MRPL12P52815 198 aaKnown RBP15.99■□□□□ 0.15
TCOF1-215ENST00000515516 ASPRV1Q53RT3 343 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 GPR153Q6NV75 609 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 RNF207Q6ZRF8 634 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 EEPD1Q7L9B9 569 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 BADQ92934 168 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 UBA5Q9GZZ9 404 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 KATNBL1Q9H079 304 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 UPF3AQ9H1J1 476 aaKnown RBP15.99■□□□□ 0.15
TCOF1-215ENST00000515516 VTA1Q9NP79 307 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 TMEM39AQ9NV64 488 aa15.99■□□□□ 0.15
TCOF1-215ENST00000515516 U3KPZ7 1027 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-215ENST00000515516 ELP1O95163 1332 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 TNKSO95271 1327 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 MROH7Q68CQ1 1323 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 WDR19Q8NEZ3 1342 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 ALPK3Q96L96 1907 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 LOC102724159A0A0B4J2E5 919 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 MYADML2A6NDP7 307 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 NFIBO00712 420 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 ASGR1P07306 291 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 PARP1P09874 1014 aaKnown RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 RAG1P15918 1043 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 CHMLP26374 656 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 PWP2Q15269 919 aaKnown RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 IFIT1BQ5T764 474 aaKnown RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 CCSAPQ6IQ19 270 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 KIAA1211Q6ZU35 1233 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 FBXO16Q8IX29 292 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 ENAHQ8N8S7 591 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-215ENST00000515516 TOX2Q96NM4 488 aa15.98■□□□□ 0.15
TCOF1-215ENST00000515516 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-215ENST00000515516 TRIM43BA6NCK2 446 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 DYNC1LI2O43237 492 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-215ENST00000515516 ADCY6O43306 1168 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 ALDH5A1P51649 535 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-215ENST00000515516 USH1GQ495M9 461 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 ANKRD33Q7Z3H0 272 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 SH3RF1Q7Z6J0 888 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 TLK2Q86UE8 772 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 CLEC4DQ8WXI8 215 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 TRIM43Q96BQ3 446 aaPredicted RBP15.97■□□□□ 0.15
TCOF1-215ENST00000515516 PURBQ96QR8 312 aaKnown RBP15.97■□□□□ 0.15
TCOF1-215ENST00000515516 Q9Y3F1 56 aa15.97■□□□□ 0.15
TCOF1-215ENST00000515516 FRMPD3Q5JV73 1810 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 ZNFX1Q9P2E3 1918 aaKnown RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 A0A0U1RQG5 324 aaPredicted RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 ERICH2A1L162 156 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 TLR3O15455 904 aaKnown RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 CABYRO75952 493 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 SMPD1P17405 629 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 BEX3Q00994 111 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 PDE4DQ08499 809 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 CDC37Q16543 378 aaPredicted RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 FSCN1Q16658 493 aaKnown RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 RALYLQ86SE5 291 aaKnown RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 ADGRF4Q8IZF3 695 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 MORC4Q8TE76 937 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 IL25Q9H293 177 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 VAT1LQ9HCJ6 419 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 PDGFCQ9NRA1 345 aa15.96■□□□□ 0.15
TCOF1-215ENST00000515516 GNEQ9Y223 722 aaKnown RBP15.96■□□□□ 0.15
TCOF1-215ENST00000515516 ASTN1O14525 1302 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 ABCB11O95342 1321 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 ARVCFO00192 962 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 KIAA0355O15063 1070 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 RPS6P62753 249 aaKnown RBP15.95■□□□□ 0.14
TCOF1-215ENST00000515516 NKX3-2P78367 333 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms