RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 MINPP1Q9UNW1 487 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 ZNF451Q9Y4E5 1061 aa5.78□□□□□ -1.48
NUP54-212ENST00000513248 MAGI1Q96QZ7 1491 aaPredicted RBP5.77□□□□□ -1.49
NUP54-212ENST00000513248 TEX51A0A1B0GUA7 166 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 SSU72P8A0A1W2PR75 194 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 MEIS1O00470 390 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 SYPP08247 313 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 CD247P20963 164 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 CTSKP43235 329 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 ZNF143P52747 638 aaPredicted RBP5.77□□□□□ -1.49
NUP54-212ENST00000513248 ZNF445P59923 1031 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 FXNQ16595 210 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 DDR2Q16832 855 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 GNPTABQ3T906 1256 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 C6orf15Q6UXA7 325 aaPredicted RBP5.77□□□□□ -1.49
NUP54-212ENST00000513248 LINC00116Q8NCU8 138 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 RELTQ969Z4 430 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 HAUS7Q99871 368 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 IRF2BPLQ9H1B7 796 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 FAM86C1Q9NVL1 165 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 YBX2Q9Y2T7 364 aaKnown RBP5.77□□□□□ -1.49
NUP54-212ENST00000513248 WDR97A6NE52 1622 aa5.77□□□□□ -1.49
NUP54-212ENST00000513248 ARHGEF11O15085 1522 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 ABCA10Q8WWZ4 1543 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 B2RBV5 119 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 FKTNO75072 461 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 GJB6O95452 261 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 TP53P04637 393 aaPredicted RBP5.76□□□□□ -1.49
NUP54-212ENST00000513248 EPHX1P07099 455 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 RPL10P27635 214 aaKnown RBP5.76□□□□□ -1.49
NUP54-212ENST00000513248 TRHRP34981 398 aaPredicted RBP5.76□□□□□ -1.49
NUP54-212ENST00000513248 GTF2F1P35269 517 aaKnown RBP eCLIP5.76□□□□□ -1.49
NUP54-212ENST00000513248 CHRNEQ04844 493 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 DUSP4Q13115 394 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 KIAA1211LQ6NV74 962 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 WAPLQ7Z5K2 1190 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 SPPL2CQ8IUH8 684 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 UBXN4Q92575 508 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 INTS4Q96HW7 963 aaKnown RBP5.76□□□□□ -1.49
NUP54-212ENST00000513248 G6PC3Q9BUM1 346 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 DSCC1Q9BVC3 393 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 ZNF552Q9H707 407 aaPredicted RBP5.76□□□□□ -1.49
NUP54-212ENST00000513248 FHOD1Q9Y613 1164 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 CHD1O14646 1710 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 SYNJ2O15056 1496 aa5.76□□□□□ -1.49
NUP54-212ENST00000513248 RIMBP3CA6NJZ7 1639 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 RIMBP3BA6NNM3 1639 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 RIMBP3Q9UFD9 1639 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 MYOCOSA0A1B0GUC4 107 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 TMEM82A0PJX8 343 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 BMP8BP34820 402 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 TCERG1LQ5VWI1 586 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 CRTC3Q6UUV7 619 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 LRP10Q7Z4F1 713 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 CKAP2LQ8IYA6 745 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 ARHGEF39Q8N4T4 335 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 ANKS4BQ8N8V4 417 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 LINC01599Q8WXQ3 324 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 MKL1Q969V6 931 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 RCC1LQ96I51 464 aaKnown RBP5.75□□□□□ -1.49
NUP54-212ENST00000513248 KCNC2Q96PR1 638 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 CCDC113Q9H0I3 377 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 C19orf44Q9H6X5 657 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 EBF1Q9UH73 591 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 ZMYM5Q9UJ78 669 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 SYNJ1O43426 1573 aa5.75□□□□□ -1.49
NUP54-212ENST00000513248 TOP2BQ02880 1626 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 ANKRD34BA5PLL1 514 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 ZNF205O95201 554 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 GSNP06396 782 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 CEBPAP49715 358 aaPredicted RBP5.74□□□□□ -1.49
NUP54-212ENST00000513248 TIGD5Q53EQ6 642 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 ZNF385BQ569K4 471 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 SOGA3Q5TF21 947 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 ZPBP2Q6X784 338 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 TMEM151BQ8IW70 566 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 MAP6Q96JE9 813 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 ZCCHC4Q9H5U6 513 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 SIRPGQ9P1W8 387 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 WHRNQ9P202 907 aa5.74□□□□□ -1.49
NUP54-212ENST00000513248 HRKO00198 91 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 RFXAPO00287 272 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 SUSD5O60279 629 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 USP2O75604 605 aaPredicted RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 ITGA4P13612 1032 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 ENDOUP21128 410 aaKnown RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 RASA3Q14644 834 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 NOL9Q5SY16 702 aaKnown RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 LARP1BQ659C4 914 aaKnown RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 ZNF605Q86T29 641 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 BRF1Q92994 677 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 ZNF669Q96BR6 464 aaPredicted RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 FCRL2Q96LA5 508 aaPredicted RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 MRGPRX3Q96LB0 322 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 EPN3Q9H201 632 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 GCM1Q9NP62 436 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 RTEL1Q9NZ71 1219 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 APEX2Q9UBZ4 518 aa5.73□□□□□ -1.49
NUP54-212ENST00000513248 CNOT6Q9ULM6 557 aaKnown RBP5.73□□□□□ -1.49
NUP54-212ENST00000513248 DIS3Q9Y2L1 958 aaKnown RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms