RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GUCY2DQ02846 1103 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 NR1I3Q14994 352 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 USP49Q70CQ1 688 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 PEX26Q7Z412 305 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CCDC91Q7Z6B0 441 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 AK8Q96MA6 479 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 CDCA7Q9BWT1 371 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 JRKLQ9Y4A0 524 aa9.31□□□□□ -0.92
LIMCH1-216ENST00000512820 DIP2AQ14689 1571 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CALUO43852 315 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 GNA14O95837 355 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 EZRP15311 586 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 H2AFXP16104 143 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PRCPP42785 496 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CRKLP46109 303 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 COL9A3Q14050 684 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CCDC25Q86WR0 208 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 AGXT2Q9BYV1 514 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 LGALS16A8MUM7 142 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 MOCS3O95396 460 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 FNBP4Q8N3X1 1017 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CABS1Q96KC9 395 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PPANQ9NQ55 473 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 RIMBP2O15034 1052 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PLCG1P19174 1290 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 TNFAIP3P21580 790 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PLS1Q14651 629 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 ZRSR2Q15696 482 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 DAAM2Q86T65 1068 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 NAP1L3Q99457 506 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 SAMD15Q9P1V8 674 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CAPN7Q9Y6W3 813 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 FAM205CA6NFA0 338 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 EIF4A3P38919 411 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 EPHB4P54760 987 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 EHHADHQ08426 723 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 NCAPHQ15003 741 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PTPAQ15257 358 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 PTPROQ16827 1216 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 RAD9BQ6WBX8 426 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 CERS3Q8IU89 383 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 NT5C3AQ9H0P0 336 aa9.3□□□□□ -0.92
LIMCH1-216ENST00000512820 TTC26A0AVF1 554 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 MAN2A1Q16706 1144 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 ZC3H12CQ9C0D7 883 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 ZNF219Q9P2Y4 722 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 CTNNA1P35221 906 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 VSNL1P62760 191 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 GRIN1Q05586 938 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 KRT71Q3SY84 523 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 FAM26FQ5R3K3 315 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 CCDC174Q6PII3 467 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 GPBP1Q86WP2 473 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 LARP4BQ92615 738 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 KRT12Q99456 494 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 BRIP1Q9BX63 1249 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 PANK4Q9NVE7 773 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 HDAC6Q9UBN7 1215 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 ADD3Q9UEY8 706 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 DNM3Q9UQ16 869 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 FRMD4BQ9Y2L6 1034 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 FRMPD2Q68DX3 1309 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 DIP2BQ9P265 1576 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 LOC102724428A0A0B4J2F2 783 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 PLA2G4AP47712 749 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 SIK1P57059 783 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 LRRC41Q15345 812 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 ILDR1Q86SU0 546 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 PLA2G12BQ9BX93 195 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 HPSEQ9Y251 543 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 PCDHA13Q9Y5I0 950 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 FHOD1Q9Y613 1164 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 ANKRD65E5RJM6 399 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 VIMP08670 466 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 MTMR3Q13615 1198 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 CNBD1Q8NA66 436 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 EPB41L5Q9HCM4 733 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 FAM184BQ9ULE4 1060 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 PCDHA12Q9UN75 941 aa9.29□□□□□ -0.92
LIMCH1-216ENST00000512820 SPATA31D1Q6ZQQ2 1576 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 A0A1W2PRG0 241 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 ACTN4O43707 911 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 PPFIA4O75335 1185 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 USP17L8P0C7I0 530 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 FXR1P51114 621 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 MRPS25P82663 173 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SLC7A5Q01650 507 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 TRAF1Q13077 416 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 CALCOCO2Q13137 446 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 RASGRP2Q7LDG7 609 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 FMNL3Q8IVF7 1028 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SYCE1Q8N0S2 351 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 PAIP2Q9BPZ3 127 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 GLT8D2Q9H1C3 349 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SWAP70Q9UH65 585 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 MTUS1Q9ULD2 1270 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 SPATA31A3Q5VYP0 1347 aa9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 HEXIM1O94992 359 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-216ENST00000512820 CSF1RP07333 972 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms