RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 TRIM29Q14134 588 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.29□□□□□ -1.08
NUP54-204ENST00000506098 FAM43AQ8N2R8 423 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 SAMD3Q8N6K7 520 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 DAGLBQ8NCG7 672 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 CCDC148Q8NFR7 591 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 PIBF1Q8WXW3 757 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 GPKOWQ92917 476 aaPredicted RBP eCLIP8.29□□□□□ -1.08
NUP54-204ENST00000506098 COA7Q96BR5 231 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 GLT8D2Q9H1C3 349 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 GJB4Q9NTQ9 266 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 VPS54Q9P1Q0 977 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 BCCIPQ9P287 314 aaKnown RBP eCLIP8.29□□□□□ -1.08
NUP54-204ENST00000506098 ZDHHC9Q9Y397 364 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 PCDHA1Q9Y5I3 950 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 ABCB11O95342 1321 aa8.29□□□□□ -1.08
NUP54-204ENST00000506098 WDR33Q9C0J8 1336 aaKnown RBP8.29□□□□□ -1.08
NUP54-204ENST00000506098 MYH11P35749 1972 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 H3BQV1 296 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 IGF2BP3O00425 579 aaKnown RBP eCLIP8.28□□□□□ -1.08
NUP54-204ENST00000506098 OPLAHO14841 1288 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 CNMDO75829 334 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 ZSCAN22P10073 491 aaPredicted RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 U2AF2P26368 475 aaKnown RBP eCLIP8.28□□□□□ -1.085e-7■□□□□ 8.9
NUP54-204ENST00000506098 GNA11P29992 359 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 GCLCP48506 637 aaPredicted RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 CLK2P49760 499 aaKnown RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 NAPAP54920 295 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 SNAP25P60880 206 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 MKRN3Q13064 507 aaKnown RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 PKP1Q13835 747 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 TMEM132BQ14DG7 1078 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 TKFCQ3LXA3 575 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 IFFO2Q5TF58 517 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 OTUD7BQ6GQQ9 843 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 CYP4F22Q6NT55 531 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 HEATR3Q7Z4Q2 680 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 IFNL1Q8IU54 200 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 CAPNS2Q96L46 248 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 AGBL1Q96MI9 1066 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 FOXP1Q9H334 677 aaPredicted RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 ZSCAN16Q9H4T2 348 aaPredicted RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 RIC8AQ9NPQ8 531 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 MAP3K20Q9NYL2 800 aaKnown RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 BTBD7Q9P203 1132 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 RBPJLQ9UBG7 517 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 MRPL11Q9Y3B7 192 aaKnown RBP8.28□□□□□ -1.08
NUP54-204ENST00000506098 RABGAP1Q9Y3P9 1069 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 ADGRA2Q96PE1 1338 aa8.28□□□□□ -1.08
NUP54-204ENST00000506098 SMCO2A6NFE2 343 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 PIK3CDO00329 1044 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 F13A1P00488 732 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 MAP2K2P36507 400 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 STAT3P40763 770 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 NLRP5P59047 1200 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 GUCY1B3Q02153 619 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 KIF23Q02241 960 aaPredicted RBP8.27□□□□□ -1.09
NUP54-204ENST00000506098 USH1GQ495M9 461 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 MCTP2Q6DN12 878 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 CCDC174Q6PII3 467 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 RIOX2Q8IUF8 465 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 DIS3L2Q8IYB7 885 aaKnown RBP8.27□□□□□ -1.09
NUP54-204ENST00000506098 BLIDQ8IZY5 108 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 BICD2Q8TD16 824 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 CLEC4DQ8WXI8 215 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 CUL5Q93034 780 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 TNFRSF25Q93038 417 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 ZIC5Q96T25 663 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 PARK7Q99497 189 aaKnown RBP8.27□□□□□ -1.09
NUP54-204ENST00000506098 TEX13BQ9BXU2 312 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 SPATC1LQ9H0A9 340 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 RAVER2Q9HCJ3 691 aaKnown RBP8.27□□□□□ -1.09
NUP54-204ENST00000506098 C6orf50Q9HD87 102 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 MORF4L1Q9UBU8 362 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 CCPG1Q9ULG6 757 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 PCDHA4Q9UN74 947 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 KCNJ14Q9UNX9 436 aa8.27□□□□□ -1.09
NUP54-204ENST00000506098 CTDP1Q9Y5B0 961 aaPredicted RBP8.27□□□□□ -1.09
NUP54-204ENST00000506098 VPS37CA5D8V6 355 aaPredicted RBP8.26□□□□□ -1.09
NUP54-204ENST00000506098 BTBD18B2RXH4 712 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 KIF28PB7ZC32 967 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 MEIS2O14770 477 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 ADAMTS3O15072 1205 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 SLC25A27O95847 323 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 ALDH1A1P00352 501 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 CYP2C8P10632 490 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 COPB2P35606 906 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 KRT2P35908 639 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 HSD17B4P51659 736 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 ADCY7P51828 1080 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 MRPL12P52815 198 aaKnown RBP8.26□□□□□ -1.09
NUP54-204ENST00000506098 ERVK-9P63128 1117 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 ERVK-24P63145 666 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 RESTQ13127 1097 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 SAFBQ15424 915 aaKnown RBP eCLIP8.26□□□□□ -1.09
NUP54-204ENST00000506098 Q3C1V9 767 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 SNRNP48Q6IEG0 339 aaKnown RBP8.26□□□□□ -1.09
NUP54-204ENST00000506098 CLEC17AQ6ZS10 378 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 BRAPQ7Z569 592 aa8.26□□□□□ -1.09
NUP54-204ENST00000506098 MCF2L2Q86YR7 1114 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms