RNA–Protein interactions for RNA: ENST00000503923.1

VCAN-205, Transcript of versican, humanhuman

TSL 4

Gene VCAN, Length 498 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-205ENST00000503923 DPP9Q86TI2 863 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 CMTR1Q8N1G2 835 aaKnown RBP12.9□□□□□ -0.34
VCAN-205ENST00000503923 CCDC82Q8N4S0 544 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 USP6NLQ92738 828 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 LARP6Q9BRS8 491 aaKnown RBP12.9□□□□□ -0.34
VCAN-205ENST00000503923 MCOLN1Q9GZU1 580 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 SLC5A4Q9NY91 659 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 SEC63Q9UGP8 760 aaKnown RBP12.9□□□□□ -0.34
VCAN-205ENST00000503923 PTCH2Q9Y6C5 1203 aa12.9□□□□□ -0.34
VCAN-205ENST00000503923 SMCHD1A6NHR9 2005 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 HOXC6P09630 235 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 XRCC5P13010 732 aaKnown RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 TAL1P17542 331 aaPredicted RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 CYP2B6P20813 491 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 ADD1P35611 737 aaKnown RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 CCT2P78371 535 aaKnown RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 MUM1L1Q5H9M0 696 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 ANKRD35Q8N283 1001 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 SLAIN1Q8ND83 568 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 PXYLP1Q8TE99 480 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 PIBF1Q8WXW3 757 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 DDX11Q96FC9 970 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 APBA2Q99767 749 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 SLKQ9H2G2 1235 aaPredicted RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 TPCN1Q9ULQ1 816 aa12.89□□□□□ -0.35
VCAN-205ENST00000503923 MRPL11Q9Y3B7 192 aaKnown RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 ZNFX1Q9P2E3 1918 aaKnown RBP12.89□□□□□ -0.35
VCAN-205ENST00000503923 PFASO15067 1338 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 CNTNAP5Q8WYK1 1306 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 ADCY3O60266 1144 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 PPP1R11O60927 126 aaPredicted RBP12.88□□□□□ -0.35
VCAN-205ENST00000503923 COBLO75128 1261 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 FUT2Q10981 343 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 STK3Q13188 491 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 TRMT44Q8IYL2 757 aaKnown RBP12.88□□□□□ -0.35
VCAN-205ENST00000503923 CLEC4DQ8WXI8 215 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 MAF1Q9H063 256 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 A1CFQ9NQ94 594 aaKnown RBP12.88□□□□□ -0.35
VCAN-205ENST00000503923 PCDHA1Q9Y5I3 950 aa12.88□□□□□ -0.35
VCAN-205ENST00000503923 NFIBO00712 420 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 CPLX1O14810 134 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 ST18O60284 1047 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 PFKFB2O60825 505 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 PGK2P07205 417 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 IFNAR1P17181 557 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 GRK4P32298 578 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 SCRN1Q12765 414 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 NTRK3Q16288 839 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 SLC9C1Q4G0N8 1177 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 CPLX2Q6PUV4 134 aaKnown RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 NSMFQ6X4W1 530 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 NOL8Q76FK4 1167 aaKnown RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 MCF2L2Q86YR7 1114 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 RGS22Q8NE09 1264 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 NPLOC4Q8TAT6 608 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 NCOA5Q9HCD5 579 aaKnown RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 RBM27Q9P2N5 1060 aaKnown RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 LIMCH1Q9UPQ0 1083 aa12.87□□□□□ -0.35
VCAN-205ENST00000503923 DIS3Q9Y2L1 958 aaKnown RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 V9GY48 417 aaPredicted RBP12.87□□□□□ -0.35
VCAN-205ENST00000503923 DNAJC25-GNG10A0A024R161 153 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 PTPDC1A2A3K4 754 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 POTEB2H3BUK9 544 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 PRPF3O43395 683 aaKnown RBP12.86□□□□□ -0.35
VCAN-205ENST00000503923 AKAP17AQ02040 695 aaKnown RBP12.86□□□□□ -0.35
VCAN-205ENST00000503923 ME3Q16798 604 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 ZNF792Q3KQV3 632 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 RNF207Q6ZRF8 634 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 TNS4Q8IZW8 715 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 SAMD3Q8N6K7 520 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 RNF26Q9BY78 433 aaPredicted RBP12.86□□□□□ -0.35
VCAN-205ENST00000503923 CYP39A1Q9NYL5 469 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 PLXNA1Q9UIW2 1896 aa12.86□□□□□ -0.35
VCAN-205ENST00000503923 RBBP6Q7Z6E9 1792 aaKnown RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 hCG_1642624A0A1W2PR95 340 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 hCG_1984214I3L0E3 225 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 CDKL5O76039 1030 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 HMGCRP04035 888 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 ELNP15502 786 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 RPS6P62753 249 aaKnown RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 BAATQ14032 418 aaPredicted RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 CCL14Q16627 93 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 OLFML2BQ68BL8 750 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 HEATR3Q7Z4Q2 680 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 TRIM22Q8IYM9 498 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 ZNF713Q8N859 430 aaPredicted RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 FAM133AQ8N9E0 248 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 SH3TC2Q8TF17 1288 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 TRIB2Q92519 343 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 GTF3C6Q969F1 213 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 ARMC5Q96C12 935 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 MAML3Q96JK9 1138 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 ZSCAN31Q96LW9 406 aaPredicted RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 SLC26A6Q9BXS9 759 aa12.85□□□□□ -0.35
VCAN-205ENST00000503923 MAP3K20Q9NYL2 800 aaKnown RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 BIN2Q9UBW5 565 aaPredicted RBP12.85□□□□□ -0.35
VCAN-205ENST00000503923 HTTP42858 3142 aa12.84□□□□□ -0.35
VCAN-205ENST00000503923 LARGE1O95461 756 aa12.84□□□□□ -0.35
VCAN-205ENST00000503923 INHAP05111 366 aa12.84□□□□□ -0.35
VCAN-205ENST00000503923 CALML3P27482 149 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms