RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 USP17L11C9JVI0 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L18D6R9N7 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L22D6RA61 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L17D6RBQ6 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L19D6RCP7 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L20D6RJB6 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 PLA2G6O60733 806 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 SSBP05455 408 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP54-215ENST00000497106 GUCY1A2P33402 732 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L24Q0WX57 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 CABP7Q86V35 215 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 MLKLQ8NB16 471 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 SYT17Q9BSW7 474 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 JMJD4Q9H9V9 463 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 KIF28PB7ZC32 967 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 NLRP12P59046 1061 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 KRBA2Q6ZNG9 492 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 FASTKD5Q7L8L6 764 aaKnown RBP9.44□□□□□ -0.9
USP54-215ENST00000497106 ELOA2Q8IYF1 753 aaPredicted RBP9.44□□□□□ -0.9
USP54-215ENST00000497106 SPICE1Q8N0Z3 855 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 COA7Q96BR5 231 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 MAF1Q9H063 256 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 KIAA1683Q9H0B3 1180 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 CCNA1P78396 465 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 PLS1Q14651 629 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 ANO6Q4KMQ2 910 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 PCDHA6Q9UN73 950 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 PCDHA8Q9Y5H6 950 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 SERPINC1P01008 464 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 ATP2C1P98194 919 aaPredicted RBP9.43□□□□□ -0.9
USP54-215ENST00000497106 POSTNQ15063 836 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 GNPTABQ3T906 1256 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 FCHSD1Q86WN1 690 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 MB21D1Q8N884 522 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 CDHR1Q96JP9 859 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 STK17AQ9UEE5 414 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 CACNA1SQ13698 1873 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 NAV1Q8NEY1 1877 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 POLR2DO15514 142 aaKnown RBP9.43□□□□□ -0.9
USP54-215ENST00000497106 RRP9O43818 475 aaKnown RBP9.43□□□□□ -0.9
USP54-215ENST00000497106 ALAS1P13196 640 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 LIG1P18858 919 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 MOXD1Q6UVY6 613 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 KCTD17Q8N5Z5 321 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 NLGN2Q8NFZ4 835 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 ZHX2Q9Y6X8 837 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 BICDL2A1A5D9 508 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 TBCAO75347 108 aaKnown RBP9.43□□□□□ -0.9
USP54-215ENST00000497106 SNHG28P0DPA3 235 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 EPHX2P34913 555 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 TXKP42681 527 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 PKN1Q16512 942 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 GADL1Q6ZQY3 521 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 C2orf69Q8N8R5 385 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 CTAGE1Q96RT6 745 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 WDR11Q9BZH6 1224 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 PCDHB6Q9Y5E3 794 aa9.43□□□□□ -0.9
USP54-215ENST00000497106 GTPBP6O43824 516 aaPredicted RBP9.42□□□□□ -0.9
USP54-215ENST00000497106 CCT6AP40227 531 aaKnown RBP9.42□□□□□ -0.9
USP54-215ENST00000497106 ANKRD13AQ8IZ07 590 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 SNX29Q8TEQ0 813 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 KIAA1468Q9P260 1216 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 PSMA7O14818 248 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 NR1I2O75469 434 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 PTGER2P43116 358 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 METTL16Q86W50 562 aaKnown RBP9.42□□□□□ -0.9
USP54-215ENST00000497106 CPXCR1Q8N123 301 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 PRR12Q9ULL5 1215 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 TBX3O15119 743 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 CCP110O43303 1012 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 PRKG1Q13976 671 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 CNNM4Q6P4Q7 775 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 OXER1Q8TDS5 423 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 FAM20AQ96MK3 541 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 CSRNP2Q9H175 543 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 SLC5A4Q9NY91 659 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 MYH2Q9UKX2 1941 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 LAMA4Q16363 1823 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 SNED1Q8TER0 1413 aa9.42□□□□□ -0.9
USP54-215ENST00000497106 PPP4R3AQ6IN85 833 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 BTNL9Q6UXG8 535 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 CCDC65Q8IXS2 484 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 NOC3LQ8WTT2 800 aaKnown RBP9.41□□□□□ -0.9
USP54-215ENST00000497106 TEKT3Q9BXF9 490 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 ADD3Q9UEY8 706 aaKnown RBP9.41□□□□□ -0.9
USP54-215ENST00000497106 KCNG1Q9UIX4 513 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 PCDHA12Q9UN75 941 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 AFMP43652 599 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 NDUFA8P51970 172 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 ASIC1P78348 528 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 SPP2Q13103 211 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 ZFPM1Q8IX07 1006 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 SYMPKQ92797 1274 aaKnown RBP9.41□□□□□ -0.9
USP54-215ENST00000497106 SLC10A4Q96EP9 437 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 WDR18Q9BV38 432 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 PES1O00541 588 aaKnown RBP9.41□□□□□ -0.9
USP54-215ENST00000497106 ARHGEF16Q5VV41 709 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 XRRA1Q6P2D8 792 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 NSMFQ6X4W1 530 aa9.41□□□□□ -0.9
USP54-215ENST00000497106 CREBRFQ8IUR6 639 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms