RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TMX1Q9H3N1 280 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 TDRD3Q9H7E2 651 aaKnown RBP23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 KANSL2Q9H9L4 492 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 ARFGEF1Q9Y6D6 1849 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 CUEDC2Q9H467 287 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 RWDD2AQ9UIY3 292 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 ATRNL1Q5VV63 1379 aa23.81■■□□□ 1.4
CCDC88B-208ENST00000492980 RIOK3O14730 519 aaKnown RBP23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 MYL1P05976 194 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 SPECC1LQ69YQ0 1117 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 DCAF4Q8WV16 495 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 MTMR9Q96QG7 549 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 PLCG1P19174 1290 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 TECP42680 631 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 CLK2P49760 499 aaKnown RBP23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 GOLGA8FQ08AF8 430 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 GOLGA8DPQ0D2H9 430 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 SIAH1Q8IUQ4 282 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 IGSF22Q8N9C0 903 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 PDGFDQ9GZP0 370 aaPredicted RBP23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 MAGEF1Q9HAY2 307 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 GDAQ9Y2T3 454 aa23.8■■□□□ 1.4
CCDC88B-208ENST00000492980 COL2A1P02458 1487 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 PSDA5PKW4 1024 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 KLRC4O43908 158 aa23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 ENTPD3O75355 529 aa23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 PAK1Q13153 545 aa23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 KCNB1Q14721 858 aa23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 SEPT2Q15019 361 aa23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 PRMT6Q96LA8 375 aaPredicted RBP23.79■■□□□ 1.4
CCDC88B-208ENST00000492980 PTPN14Q15678 1187 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 UBE2SQ16763 222 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 CEP135Q66GS9 1140 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 SLFN13Q68D06 897 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 TMEM179Q6ZVK1 233 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 CUL5Q93034 780 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 MMTAG2Q9BU76 263 aaKnown RBP23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 SLC37A4O43826 429 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 TDP2O95551 362 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 CALCRLQ16602 461 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 NELFBQ8WX92 580 aa23.78■■□□□ 1.4
CCDC88B-208ENST00000492980 COBLO75128 1261 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 GDF11O95390 407 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 PRCPP42785 496 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 SLC1A4P43007 532 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 TNNI2P48788 182 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 ICA1Q05084 483 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 KMT5BQ4FZB7 885 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 PPP1R13BQ96KQ4 1090 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 ADD3Q9UEY8 706 aaKnown RBP23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 TEX33O43247 280 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 TXKP42681 527 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 ABCB5Q2M3G0 1257 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 TMEM139Q8IV31 216 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 CTAGE1Q96RT6 745 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 PAXBP1Q9Y5B6 917 aa23.77■■□□□ 1.4
CCDC88B-208ENST00000492980 FXR2P51116 673 aaKnown RBP eCLIP23.76■■□□□ 1.39
CCDC88B-208ENST00000492980 MRPL12P52815 198 aaKnown RBP23.76■■□□□ 1.39
CCDC88B-208ENST00000492980 SEMA3FQ13275 785 aa23.76■■□□□ 1.39
CCDC88B-208ENST00000492980 RAD21O60216 631 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 RHOBTB3O94955 611 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 QRICH1Q2TAL8 776 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 GRIPAP1Q4V328 841 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 CCDC93Q567U6 631 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 ADSSL1Q8N142 457 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 TTLL6Q8N841 843 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 TC2NQ8N9U0 490 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 MYH7BA7E2Y1 1941 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 PBX1P40424 430 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 PPP4R3AQ6IN85 833 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 PSTPIP2Q9H939 334 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 MAPK8IP1Q9UQF2 711 aa23.75■■□□□ 1.39
CCDC88B-208ENST00000492980 GMCL1P1Q8NEA9 526 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 LIMA1Q9UHB6 759 aaKnown RBP23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 JAG1P78504 1218 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 CDC37Q16543 378 aaPredicted RBP23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 RSBN1LQ6PCB5 846 aaPredicted RBP23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 RTKN2Q8IZC4 609 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 PSMD1Q99460 953 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 TRIM9Q9C026 710 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 LRWD1Q9UFC0 647 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 ATF5Q9Y2D1 282 aaPredicted RBP23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 COL4A5P29400 1685 aa23.74■■□□□ 1.39
CCDC88B-208ENST00000492980 TMEM266Q2M3C6 531 aa23.73■■□□□ 1.39
CCDC88B-208ENST00000492980 GIMAP8Q8ND71 665 aaPredicted RBP23.73■■□□□ 1.39
CCDC88B-208ENST00000492980 CALML4Q96GE6 196 aa23.73■■□□□ 1.39
CCDC88B-208ENST00000492980 C7orf25Q9BPX7 421 aa23.73■■□□□ 1.39
CCDC88B-208ENST00000492980 F5H6K3 240 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 KLRC3Q07444 240 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 GRB10Q13322 594 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 RRP1BQ14684 758 aaKnown RBP23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 KRT31Q15323 416 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 FILIP1LQ4L180 1135 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 ZNF592Q92610 1267 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 CSRNP1Q96S65 589 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 SPDYE2BA6NHP3 402 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 KIF2AO00139 706 aaPredicted RBP23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 GH2P01242 217 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 SPDYE6P0CI01 402 aa23.72■■□□□ 1.39
CCDC88B-208ENST00000492980 ADKP55263 362 aaKnown RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms