RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 C1orf53Q5VUE5 145 aa27■■□□□ 1.91
COL9A3-213ENST00000489045 KLHDC9Q8NEP7 349 aa27■■□□□ 1.91
COL9A3-213ENST00000489045 ZSCAN10Q96SZ4 725 aaPredicted RBP27■■□□□ 1.91
COL9A3-213ENST00000489045 TSEN34Q9BSV6 310 aaKnown RBP27■■□□□ 1.91
COL9A3-213ENST00000489045 MYH6P13533 1939 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 MYADML2A6NDP7 307 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 PNMA1Q8ND90 353 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 LRCH3Q96II8 777 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 LBHD1Q9BQE6 289 aaPredicted RBP26.99■■□□□ 1.91
COL9A3-213ENST00000489045 KRT23Q9C075 422 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 KAT14Q9H8E8 782 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 PRDM5Q9NQX1 630 aaPredicted RBP26.99■■□□□ 1.91
COL9A3-213ENST00000489045 ZSWIM5Q9P217 1185 aa26.99■■□□□ 1.91
COL9A3-213ENST00000489045 DDX49Q9Y6V7 483 aaKnown RBP26.99■■□□□ 1.91
COL9A3-213ENST00000489045 NFIBO00712 420 aa26.98■■□□□ 1.91
COL9A3-213ENST00000489045 GOLGA8HP0CJ92 632 aa26.98■■□□□ 1.91
COL9A3-213ENST00000489045 CHMLP26374 656 aa26.98■■□□□ 1.91
COL9A3-213ENST00000489045 ACLYP53396 1101 aa26.98■■□□□ 1.91
COL9A3-213ENST00000489045 IRX5P78411 483 aaPredicted RBP26.98■■□□□ 1.91
COL9A3-213ENST00000489045 GPATCH4Q5T3I0 446 aaKnown RBP26.98■■□□□ 1.91
COL9A3-213ENST00000489045 CNNM2Q9H8M5 875 aa26.98■■□□□ 1.91
COL9A3-213ENST00000489045 TNKSO95271 1327 aa26.97■■□□□ 1.91
COL9A3-213ENST00000489045 C6orf222P0C671 652 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-213ENST00000489045 KCNA10Q16322 511 aa26.97■■□□□ 1.91
COL9A3-213ENST00000489045 ENAHQ8N8S7 591 aaPredicted RBP26.97■■□□□ 1.91
COL9A3-213ENST00000489045 RUFY2Q8WXA3 655 aa26.97■■□□□ 1.91
COL9A3-213ENST00000489045 ANKS1AQ92625 1134 aa26.97■■□□□ 1.91
COL9A3-213ENST00000489045 PURBQ96QR8 312 aaKnown RBP26.97■■□□□ 1.91
COL9A3-213ENST00000489045 UPF3AQ9H1J1 476 aaKnown RBP26.97■■□□□ 1.91
COL9A3-213ENST00000489045 PDLIM7Q9NR12 457 aa26.97■■□□□ 1.91
COL9A3-213ENST00000489045 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-213ENST00000489045 MOXD2PA6NHM9 499 aa26.96■■□□□ 1.91
COL9A3-213ENST00000489045 CST5P28325 142 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-213ENST00000489045 TLE2Q04725 743 aa26.96■■□□□ 1.91
COL9A3-213ENST00000489045 BAATQ14032 418 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-213ENST00000489045 CCSAPQ6IQ19 270 aaPredicted RBP26.96■■□□□ 1.91
COL9A3-213ENST00000489045 CPVLQ9H3G5 476 aa26.96■■□□□ 1.91
COL9A3-213ENST00000489045 SPC25Q9HBM1 224 aa26.96■■□□□ 1.91
COL9A3-213ENST00000489045 WDR19Q8NEZ3 1342 aa26.95■■□□□ 1.91
COL9A3-213ENST00000489045 PTPDC1A2A3K4 754 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 GJA9P57773 515 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 NUP133Q8WUM0 1156 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 UBA5Q9GZZ9 404 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 STARD7Q9NQZ5 370 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 PNMA2Q9UL42 364 aa26.95■■□□□ 1.9
COL9A3-213ENST00000489045 TNFAIP2Q03169 654 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 PTH1RQ03431 593 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 LRIT3Q3SXY7 679 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 SLC30A10Q6XR72 485 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 SH3RF1Q7Z6J0 888 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 CLEC4DQ8WXI8 215 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 UBAC1Q9BSL1 405 aa26.94■■□□□ 1.9
COL9A3-213ENST00000489045 TRIM43BA6NCK2 446 aa26.93■■□□□ 1.9
COL9A3-213ENST00000489045 PQBP1O60828 265 aaKnown RBP26.93■■□□□ 1.9
COL9A3-213ENST00000489045 ASGR1P07306 291 aa26.93■■□□□ 1.9
COL9A3-213ENST00000489045 EEPD1Q7L9B9 569 aa26.93■■□□□ 1.9
COL9A3-213ENST00000489045 FBXO16Q8IX29 292 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-213ENST00000489045 PCSK9Q8NBP7 692 aaKnown RBP26.93■■□□□ 1.9
COL9A3-213ENST00000489045 TRIM43Q96BQ3 446 aaPredicted RBP26.93■■□□□ 1.9
COL9A3-213ENST00000489045 ALDH5A1P51649 535 aaPredicted RBP26.92■■□□□ 1.9
COL9A3-213ENST00000489045 ASPRV1Q53RT3 343 aa26.92■■□□□ 1.9
COL9A3-213ENST00000489045 NOL8Q76FK4 1167 aaKnown RBP26.92■■□□□ 1.9
COL9A3-213ENST00000489045 MORC4Q8TE76 937 aa26.92■■□□□ 1.9
COL9A3-213ENST00000489045 PDGFCQ9NRA1 345 aa26.92■■□□□ 1.9
COL9A3-213ENST00000489045 ADD3Q9UEY8 706 aaKnown RBP26.92■■□□□ 1.9
COL9A3-213ENST00000489045 CTAGE5O15320 804 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 SGSM2O43147 1006 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 CYP21A2P08686 494 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 CLTBP09497 229 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 CALML3P27482 149 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 CDC37Q16543 378 aaPredicted RBP26.91■■□□□ 1.9
COL9A3-213ENST00000489045 USH1GQ495M9 461 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 GNASQ5JWF2 1037 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 TAPT1Q6NXT6 567 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 RNF207Q6ZRF8 634 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 CYB5R4Q7L1T6 521 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 BADQ92934 168 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 GLT1D1Q96MS3 346 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 VTA1Q9NP79 307 aa26.91■■□□□ 1.9
COL9A3-213ENST00000489045 GNEQ9Y223 722 aaKnown RBP26.91■■□□□ 1.9
COL9A3-213ENST00000489045 BEX3Q00994 111 aa26.9■■□□□ 1.9
COL9A3-213ENST00000489045 IFIT1BQ5T764 474 aaKnown RBP26.9■■□□□ 1.9
COL9A3-213ENST00000489045 TLK2Q86UE8 772 aa26.9■■□□□ 1.9
COL9A3-213ENST00000489045 ADGRF4Q8IZF3 695 aa26.9■■□□□ 1.9
COL9A3-213ENST00000489045 U3KPZ7 1027 aaPredicted RBP26.9■■□□□ 1.9
COL9A3-213ENST00000489045 ELP1O95163 1332 aa26.9■■□□□ 1.9
COL9A3-213ENST00000489045 PARP1P09874 1014 aaKnown RBP26.89■■□□□ 1.9
COL9A3-213ENST00000489045 SMPD1P17405 629 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 PTGS1P23219 599 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 RPS6P62753 249 aaKnown RBP26.89■■□□□ 1.9
COL9A3-213ENST00000489045 NKX3-2P78367 333 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 TRDNQ13061 729 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 SEC23AQ15436 765 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 ANKRD33Q7Z3H0 272 aa26.89■■□□□ 1.9
COL9A3-213ENST00000489045 LOC102724159A0A0B4J2E5 919 aa26.88■■□□□ 1.89
COL9A3-213ENST00000489045 PWP2Q15269 919 aaKnown RBP26.88■■□□□ 1.89
COL9A3-213ENST00000489045 IQSEC1Q6DN90 963 aa26.88■■□□□ 1.89
COL9A3-213ENST00000489045 TMEM63BQ5T3F8 832 aa26.87■■□□□ 1.89
COL9A3-213ENST00000489045 KIAA1211Q6ZU35 1233 aa26.87■■□□□ 1.89
COL9A3-213ENST00000489045 VTI1AQ96AJ9 217 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms