RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 ARHGEF39Q8N4T4 335 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 TOP6BLQ8N6T0 577 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 TARS2Q9BW92 718 aaKnown RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 ASPNQ9BXN1 380 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 PRDM14Q9GZV8 571 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 GFOD1Q9NXC2 390 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 SFMBT1Q9UHJ3 866 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 TPX2Q9ULW0 747 aaKnown RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 SLC5A6Q9Y289 635 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 SYNJ1O43426 1573 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 TOP2BQ02880 1626 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 BIVM-ERCC5R4GMW8 1640 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 A0A087WZG4 1122 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 GSG1L2A8MUP6 293 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 DLX3O60479 287 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 VAMP4O75379 141 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 PARNO95453 639 aaKnown RBP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 CAPNS1P04632 268 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 SNRPB2P08579 225 aaKnown RBP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 POU3F3P20264 500 aaPredicted RBP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 FAM50AQ14320 339 aaKnown RBP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 RNF180Q86T96 592 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 DDX42Q86XP3 938 aaKnown RBP eCLIP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 FIBCD1Q8N539 461 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 SLC7A14Q8TBB6 771 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 ZDHHC15Q96MV8 337 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 DSCC1Q9BVC3 393 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 MAGEC2Q9UBF1 373 aaPredicted RBP5.5□□□□□ -1.53
PTCD3-216ENST00000487043 FHOD1Q9Y613 1164 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 CEP164Q9UPV0 1460 aa5.5□□□□□ -1.53
PTCD3-216ENST00000487043 CUX1P39880 1505 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 MEIS1O00470 390 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 BIN1O00499 593 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 KCNQ2O43526 872 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 DNAJC8O75937 253 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 C6orf222P0C671 652 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 CYP7A1P22680 504 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 ECI1P42126 302 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 ATL2Q8NHH9 583 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 SYTL5Q8TDW5 730 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 LEO1Q8WVC0 666 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 KCTD13Q8WZ19 329 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 CEP89Q96ST8 783 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 SLC52A2Q9HAB3 445 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 TYW1Q9NV66 732 aaKnown RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 INTS7Q9NVH2 962 aaKnown RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 MCM8Q9UJA3 840 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 MAPRE3Q9UPY8 281 aa5.49□□□□□ -1.53
PTCD3-216ENST00000487043 DIS3Q9Y2L1 958 aaKnown RBP5.49□□□□□ -1.53
PTCD3-216ENST00000487043 KIF21AQ7Z4S6 1674 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 CBX7O95931 251 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 EOMESO95936 686 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 HOXC12P31275 282 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 NEK4P51957 841 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 GFRA1P56159 465 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 GABREP78334 506 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 PRSS53Q2L4Q9 553 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 DPY19L1Q2PZI1 675 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 SEZ6L2Q6UXD5 910 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 ZNF574Q6ZN55 896 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 BRAPQ7Z569 592 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 TMC3Q7Z5M5 1100 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 FGD2Q7Z6J4 655 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 STK11IPQ8N1F8 1099 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 BCL7CQ8WUZ0 217 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 JDP2Q8WYK2 163 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 DDX1Q92499 740 aaKnown RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 NKX2-4Q9H2Z4 354 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 TRIM39Q9HCM9 518 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 MINPP1Q9UNW1 487 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 GPR55Q9Y2T6 319 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 SF3B6Q9Y3B4 125 aaKnown RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 TNPO3Q9Y5L0 923 aaKnown RBP5.48□□□□□ -1.53
PTCD3-216ENST00000487043 CNTNAP4Q9C0A0 1308 aa5.48□□□□□ -1.53
PTCD3-216ENST00000487043 DNMBPQ6XZF7 1577 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 OPA1O60313 960 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 EFCAB14O75071 495 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 LEFTY1O75610 366 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 PAPLNO95428 1278 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 AMPD2Q01433 879 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 NTRK3Q16288 839 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 ZNF792Q3KQV3 632 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 BRDTQ58F21 947 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-216ENST00000487043 TRIM61Q5EBN2 209 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 ODR4Q5SWX8 454 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 ZNF648Q5T619 568 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-216ENST00000487043 WWC2Q6AWC2 1192 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 USP53Q70EK8 1073 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 DDX46Q7L014 1031 aaKnown RBP5.47□□□□□ -1.53
PTCD3-216ENST00000487043 STRA8Q7Z7C7 330 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 AHI1Q8N157 1196 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 PPM1KQ8N3J5 372 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 TMEM145Q8NBT3 493 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 PTPRN2Q92932 1015 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 CCDC140Q96MF4 163 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 DUSP23Q9BVJ7 150 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 C1GALT1Q9NS00 363 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 CHST7Q9NS84 486 aa5.47□□□□□ -1.53
PTCD3-216ENST00000487043 CHPF2Q9P2E5 772 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms