RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 AKAP2Q9Y2D5 859 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 FPGT-TNNI3KV9GXZ4 949 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 ABCC12Q96J65 1359 aa9.08□□□□□ -0.96
SNX13-208ENST00000482558 PDGFAP04085 211 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 EPB42P16452 691 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 PDCP20941 246 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 TCIRG1Q13488 830 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 NECTIN1Q15223 517 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 WFDC8Q8IUA0 241 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 FMNL3Q8IVF7 1028 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 TTC16Q8NEE8 873 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 MKL1Q969V6 931 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 HAUS7Q99871 368 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 LPIN3Q9BQK8 851 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 PLCD4Q9BRC7 762 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 ISCA1Q9BUE6 129 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 C11orf16Q9NQ32 467 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 TYW1Q9NV66 732 aaKnown RBP9.07□□□□□ -0.96
SNX13-208ENST00000482558 GEMIN8Q9NWZ8 242 aaKnown RBP9.07□□□□□ -0.96
SNX13-208ENST00000482558 PALD1Q9ULE6 856 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 THRAP3Q9Y2W1 955 aaKnown RBP9.07□□□□□ -0.96
SNX13-208ENST00000482558 JCADQ9P266 1359 aa9.07□□□□□ -0.96
SNX13-208ENST00000482558 AHDC1Q5TGY3 1603 aaPredicted RBP9.06□□□□□ -0.96
SNX13-208ENST00000482558 COL22A1Q8NFW1 1626 aaPredicted RBP9.06□□□□□ -0.96
SNX13-208ENST00000482558 NUP188Q5SRE5 1749 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 SPEF2Q9C093 1822 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 EYA2O00167 538 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 PRC1O43663 620 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 SH3BP5O60239 455 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 PPFIA4O75335 1185 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 PCCAP05165 728 aaPredicted RBP9.06□□□□□ -0.96
SNX13-208ENST00000482558 ZNF445P59923 1031 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 FOXO4P98177 505 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 BIRC2Q13490 618 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 LMBR1LQ6UX01 489 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 TSHZ1Q6ZSZ6 1077 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 RUFY3Q7L099 469 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 GJD3Q8N144 294 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 DDX54Q8TDD1 881 aaKnown RBP9.06□□□□□ -0.96
SNX13-208ENST00000482558 CCDC8Q9H0W5 538 aaPredicted RBP9.06□□□□□ -0.96
SNX13-208ENST00000482558 GRPEL1Q9HAV7 217 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 HELLSQ9NRZ9 838 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 PDRG1Q9NUG6 133 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 LMBRD1Q9NUN5 540 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 RNF19AQ9NV58 838 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 MED23Q9ULK4 1368 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 PLCH1Q4KWH8 1693 aa9.06□□□□□ -0.96
SNX13-208ENST00000482558 CDHR2Q9BYE9 1310 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 PALLDQ8WX93 1383 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 ERVV-1B6SEH8 477 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 EXOC5O00471 708 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 LETM1O95202 739 aaPredicted RBP9.05□□□□□ -0.96
SNX13-208ENST00000482558 CASTP20810 708 aaKnown RBP9.05□□□□□ -0.96
SNX13-208ENST00000482558 RHBDL3P58872 404 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 TFCP2Q12800 502 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 NMIQ13287 307 aaPredicted RBP9.05□□□□□ -0.96
SNX13-208ENST00000482558 CCDC57Q2TAC2 916 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 LONRF3Q496Y0 759 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 MCMDC2Q4G0Z9 681 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 ZNF394Q53GI3 561 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 PLEKHG4Q58EX7 1191 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 EPHA10Q5JZY3 1008 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 USPL1Q5W0Q7 1092 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 CREB3L3Q68CJ9 461 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 USP48Q86UV5 1035 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 FAM43AQ8N2R8 423 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 ZGPATQ8N5A5 531 aaKnown RBP9.05□□□□□ -0.96
SNX13-208ENST00000482558 TRPM4Q8TD43 1214 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 STAG1Q8WVM7 1258 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 JDP2Q8WYK2 163 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 FRMD6Q96NE9 622 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 FAM129BQ96TA1 746 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 SIL1Q9H173 461 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 BOLA2Q9H3K6 86 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 SMC3Q9UQE7 1217 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 RBM8AQ9Y5S9 174 aaKnown RBP9.05□□□□□ -0.96
SNX13-208ENST00000482558 SHANK3Q9BYB0 1731 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 DISP2A7MBM2 1401 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 SH3TC1Q8TE82 1336 aa9.05□□□□□ -0.96
SNX13-208ENST00000482558 RPAP1Q9BWH6 1393 aaPredicted RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 RPLP1P05386 114 aaKnown RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 ZFYP08048 801 aaPredicted RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 PDGFRBP09619 1106 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 XRCC6P12956 609 aaKnown RBP eCLIP9.04□□□□□ -0.96
SNX13-208ENST00000482558 CPB1P15086 417 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 FSTP19883 344 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 INPP5BP32019 993 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 CD97P48960 835 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 AK2P54819 239 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 RACK1P63244 317 aaKnown RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 CCDC158Q5M9N0 1113 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 PERM1Q5SV97 790 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 PRPF40BQ6NWY9 871 aaKnown RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 BLOC1S2Q6QNY1 142 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 KBTBD3Q8NAB2 608 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 ZBTB38Q8NAP3 1195 aaPredicted RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 PRPF38AQ8NAV1 312 aaKnown RBP9.04□□□□□ -0.96
SNX13-208ENST00000482558 CRELD1Q96HD1 420 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 SGSM3Q96HU1 749 aa9.04□□□□□ -0.96
SNX13-208ENST00000482558 JAKMIP1Q96N16 626 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms