RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	RRP1B	Q14684	758 aa	Known RBP	4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	LINC01559	Q495D7	138 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	OLFML2B	Q68BL8	750 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	LCORL	Q8N3X6	602 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	TSC1	Q92574	1164 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	APPBP2	Q92624	585 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	P2RX7	Q99572	595 aa	Known RBP	4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	PRO3102	Q9H379	93 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	C11orf49	Q9H6J7	331 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	RPAP3	Q9H6T3	665 aa	Predicted RBP	4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	ANTXR1	Q9H6X2	564 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	VCPKMT	Q9H867	229 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	KANSL2	Q9H9L4	492 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	TXNRD2	Q9NNW7	524 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	HOXC10	Q9NYD6	342 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	GJD2	Q9UKL4	321 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	COG6	Q9Y2V7	657 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	MYO9B	Q13459	2157 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	UNC80	Q8N2C7	3258 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	TANC1	Q9C0D5	1861 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	KBTBD13	C9JR72	458 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	DNM1L	O00429	736 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	FLOT1	O75955	427 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLC3A2	P08195	630 aa	Known RBP	4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLURP2	P0DP57	97 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	COL6A1	P12109	1028 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	CYP2B6	P20813	491 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	BMP8B	P34820	402 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	PLCD1	P51178	756 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	COG2	Q14746	738 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SEPT2	Q15019	361 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	ZYX	Q15942	572 aa	Known RBP	4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SBK1	Q52WX2	424 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	C12orf60	Q5U649	245 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	WDR78	Q5VTH9	848 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SIRT2	Q8IXJ6	389 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	MSL3	Q8N5Y2	521 aa	Known RBP	4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	KBTBD3	Q8NAB2	608 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	ARMC2	Q8NEN0	867 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SDR42E1	Q8WUS8	393 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	FOXJ1	Q92949	421 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	CDK15	Q96Q40	435 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	NACAP1	Q9BZK3	213 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	SPATC1L	Q9H0A9	340 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	PORCN	Q9H237	461 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	RBPJL	Q9UBG7	517 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	DDX20	Q9UHI6	824 aa	Known RBP	4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	DIS3	Q9Y2L1	958 aa	Known RBP	4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	TMX2	Q9Y320	296 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	LCT	P09848	1927 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	PFAS	O15067	1338 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	ZMYM6	O95789	1325 aa		4.95	□□□□□ -1.62
VPS13D-208	ENST00000481484	TRANK1	O15050	2925 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	PRUNE2	Q8WUY3	3088 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	APBB1	O00213	710 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	SEPT4	O43236	478 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	CNMD	O75829	334 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	CYBA	P13498	195 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ADORA2A	P29274	412 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	GUCY1A2	P33402	732 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	TDO2	P48775	406 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	OAZ1	P54368	228 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	JAG1	P78504	1218 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ATP2B2	Q01814	1243 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	CACNB2	Q08289	660 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	SHROOM1	Q2M3G4	852 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	C4orf48	Q5BLP8	95 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	SH3RF1	Q7Z6J0	888 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	C7orf61	Q8IZ16	206 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ARRDC4	Q8NCT1	418 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ACER1	Q8TDN7	264 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	DIS3L	Q8TF46	1054 aa	Known RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ZNF775	Q96BV0	537 aa	Predicted RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	EDC3	Q96F86	508 aa	Known RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	PAWR	Q96IZ0	340 aa	Known RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	TEX13B	Q9BXU2	312 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	BOLA2	Q9H3K6	86 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	DCTPP1	Q9H773	170 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	ARMT1	Q9H993	441 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	NYAP2	Q9P242	653 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	GMPR2	Q9P2T1	348 aa	Known RBP	4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	FBXO40	Q9UH90	709 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	PNMA2	Q9UL42	364 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	PPP1R9A	Q9ULJ8	1098 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	NDUFB9	Q9Y6M9	179 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLC4A4	Q9Y6R1	1079 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	WASF2	Q9Y6W5	498 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	SYNGAP1	Q96PV0	1343 aa		4.94	□□□□□ -1.62
VPS13D-208	ENST00000481484	CDH23	Q9H251	3354 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484		A0A1W2PRG0	241 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	BDP1	A6H8Y1	2624 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	ATP2A1	O14983	1001 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	RNF113A	O15541	343 aa	Known RBP	4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	GPAA1	O43292	621 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	TTLL1	O95922	423 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	IGHA2	P01877	340 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	PC	P11498	1178 aa	Known RBP	4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	FCER1A	P12319	257 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	AKR1B1	P15121	316 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	ERCC3	P19447	782 aa		4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms