RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 ICAM1P05362 532 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 ASGR1P07306 291 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 ITGB8P26012 769 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 CST5P28325 142 aaPredicted RBP17.96■□□□□ 0.47
LIMS3-203ENST00000480744 GJA9P57773 515 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 AKNAD1Q5T1N1 836 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 SYDE2Q5VT97 1194 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 CCSAPQ6IQ19 270 aaPredicted RBP17.96■□□□□ 0.47
LIMS3-203ENST00000480744 PLEKHM2Q8IWE5 1019 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 KATNBL1Q9H079 304 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 UPF3AQ9H1J1 476 aaKnown RBP17.96■□□□□ 0.47
LIMS3-203ENST00000480744 CYP39A1Q9NYL5 469 aa17.96■□□□□ 0.47
LIMS3-203ENST00000480744 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.95■□□□□ 0.46
LIMS3-203ENST00000480744 NUCB1Q02818 461 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 TNFAIP2Q03169 654 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 FAAP100Q0VG06 881 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 EEPD1Q7L9B9 569 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 ANKRD33Q7Z3H0 272 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 TBC1D10CQ8IV04 446 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 RANBP17Q9H2T7 1088 aaKnown RBP17.95■□□□□ 0.46
LIMS3-203ENST00000480744 DIAPH3Q9NSV4 1193 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 TCP11L1Q9NUJ3 509 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 STXBP5LQ9Y2K9 1186 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 COL6A3P12111 3177 aa17.95■□□□□ 0.46
LIMS3-203ENST00000480744 MYH6P13533 1939 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 BEX3Q00994 111 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 FPGSQ05932 587 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 ZNF697Q5TEC3 545 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 CWC27Q6UX04 472 aaKnown RBP17.94■□□□□ 0.46
LIMS3-203ENST00000480744 FBXO16Q8IX29 292 aaPredicted RBP17.94■□□□□ 0.46
LIMS3-203ENST00000480744 TOX2Q96NM4 488 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 PURBQ96QR8 312 aaKnown RBP17.94■□□□□ 0.46
LIMS3-203ENST00000480744 RNF41Q9H4P4 317 aaPredicted RBP17.94■□□□□ 0.46
LIMS3-203ENST00000480744 ASTN1O14525 1302 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 ELP1O95163 1332 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 NEDD4P46934 1319 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 MROH7Q68CQ1 1323 aa17.94■□□□□ 0.46
LIMS3-203ENST00000480744 A0A0U1RQG5 324 aaPredicted RBP17.93■□□□□ 0.46
LIMS3-203ENST00000480744 PDHBP11177 359 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 PCP11498 1178 aaKnown RBP17.93■□□□□ 0.46
LIMS3-203ENST00000480744 EPHB4P54760 987 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 BTNL9Q6UXG8 535 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 TLK2Q86UE8 772 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 ESR2Q92731 530 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 RNPC3Q96LT9 517 aaKnown RBP17.93■□□□□ 0.46
LIMS3-203ENST00000480744 ZKSCAN3Q9BRR0 538 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 AP5M1Q9H0R1 490 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 OSBPL3Q9H4L5 887 aa17.93■□□□□ 0.46
LIMS3-203ENST00000480744 LAMA2P24043 3122 aaKnown RBP17.93■□□□□ 0.46
LIMS3-203ENST00000480744 PTPDC1A2A3K4 754 aa17.92■□□□□ 0.46
LIMS3-203ENST00000480744 NFIBO00712 420 aa17.92■□□□□ 0.46
LIMS3-203ENST00000480744 ZNF213O14771 459 aa17.92■□□□□ 0.46
LIMS3-203ENST00000480744 PTGS1P23219 599 aa17.92■□□□□ 0.46
LIMS3-203ENST00000480744 BAATQ14032 418 aaPredicted RBP17.92■□□□□ 0.46
LIMS3-203ENST00000480744 FAM109BQ6ICB4 259 aaPredicted RBP17.92■□□□□ 0.46
LIMS3-203ENST00000480744 PDGFCQ9NRA1 345 aa17.92■□□□□ 0.46
LIMS3-203ENST00000480744 ARVCFO00192 962 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 CTAGE5O15320 804 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 DYNC1LI2O43237 492 aaPredicted RBP17.91■□□□□ 0.46
LIMS3-203ENST00000480744 SMPD1P17405 629 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 ZNF543Q08ER8 600 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 CXCL17Q6UXB2 119 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 TTC14Q96N46 770 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 GUCD1Q96NT3 240 aa17.91■□□□□ 0.46
LIMS3-203ENST00000480744 ADD3Q9UEY8 706 aaKnown RBP17.91■□□□□ 0.46
LIMS3-203ENST00000480744 GNEQ9Y223 722 aaKnown RBP17.91■□□□□ 0.46
LIMS3-203ENST00000480744 HIP1O00291 1037 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 TLR3O15455 904 aaKnown RBP17.9■□□□□ 0.46
LIMS3-203ENST00000480744 TIMP1P01033 207 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 GOLGA8HP0CJ92 632 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 CALML3P27482 149 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 CDK7P50613 346 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 FSCN1Q16658 493 aaKnown RBP17.9■□□□□ 0.46
LIMS3-203ENST00000480744 TAPT1Q6NXT6 567 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 SLC30A10Q6XR72 485 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 KIAA1211Q6ZU35 1233 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 PPP1R12CQ9BZL4 782 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 VTA1Q9NP79 307 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 TBX21Q9UL17 535 aa17.9■□□□□ 0.46
LIMS3-203ENST00000480744 KDM4AO75164 1064 aa17.89■□□□□ 0.45
LIMS3-203ENST00000480744 ALDH5A1P51649 535 aaPredicted RBP17.89■□□□□ 0.45
LIMS3-203ENST00000480744 SMAD3P84022 425 aaKnown RBP17.89■□□□□ 0.45
LIMS3-203ENST00000480744 TMEM63BQ5T3F8 832 aa17.89■□□□□ 0.45
LIMS3-203ENST00000480744 IQSEC1Q6DN90 963 aa17.89■□□□□ 0.45
LIMS3-203ENST00000480744 B4E1Z4 1266 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 ZEB2O60315 1214 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 SNHG28P0DPA3 235 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 NKX3-2P78367 333 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 USH1GQ495M9 461 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 RNF207Q6ZRF8 634 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 IQCA1Q86XH1 822 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 FAM126BQ8IXS8 530 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 UBA5Q9GZZ9 404 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 CPVLQ9H3G5 476 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 KAT14Q9H8E8 782 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 PNMA2Q9UL42 364 aa17.88■□□□□ 0.45
LIMS3-203ENST00000480744 CABYRO75952 493 aa17.87■□□□□ 0.45
LIMS3-203ENST00000480744 PPIGQ13427 754 aaKnown RBP eCLIP17.87■□□□□ 0.45
LIMS3-203ENST00000480744 IMMTQ16891 758 aaKnown RBP17.87■□□□□ 0.45
LIMS3-203ENST00000480744 CCDC178Q5BJE1 867 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms