RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 NCAPG2Q86XI2 1143 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 SNX21Q969T3 373 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 TRERF1Q96PN7 1200 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 RAVER2Q9HCJ3 691 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 ZNF236Q9UL36 1845 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 PFASO15067 1338 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 PLEKHA8P1O95397 391 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 DEXIO95424 95 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 XRCC5P13010 732 aaKnown RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 ALAS1P13196 640 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 RXRAP19793 462 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 PTPREP23469 700 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 LBX1P52954 281 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 HMGN5P82970 282 aaKnown RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 FUT2Q10981 343 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 SCRN1Q12765 414 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 IRF5Q13568 498 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 KCTD2Q14681 263 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 ME3Q16798 604 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 MCTP2Q6DN12 878 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 PPP1R18Q6NYC8 613 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 POTEEQ6S8J3 1075 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 CTU1Q7Z7A3 348 aaKnown RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 CCDC144CPQ8IYA2 1237 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 MSL3Q8N5Y2 521 aaKnown RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 GTF3C6Q969F1 213 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 AGBL1Q96MI9 1066 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 PIGSQ96S52 555 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 MPHOSPH6Q99547 160 aaKnown RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 SH3GLB2Q9NR46 395 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 RNF146Q9NTX7 359 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 SRRDQ9UH36 339 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 KIF3AQ9Y496 699 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 PCDHA1Q9Y5I3 950 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 V9GY48 417 aaPredicted RBP9.53□□□□□ -0.88
USP54-212ENST00000480210 CNTNAP5Q8WYK1 1306 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 STK36Q9NRP7 1315 aa9.53□□□□□ -0.88
USP54-212ENST00000480210 RBBP6Q7Z6E9 1792 aaKnown RBP9.52□□□□□ -0.88
USP54-212ENST00000480210 HOXC6P09630 235 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 RGS2P41220 211 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 GHRHRQ02643 423 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 MAP2K5Q13163 448 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 STK3Q13188 491 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 GRB14Q14449 540 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 PFKFB3Q16875 520 aaPredicted RBP9.52□□□□□ -0.89
USP54-212ENST00000480210 MORN1Q5T089 497 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 WDR78Q5VTH9 848 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 GALNT17Q6IS24 598 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 RASGRP2Q7LDG7 609 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 NBPF11Q86T75 865 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 HOMER1Q86YM7 354 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 ANKRD35Q8N283 1001 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 CCDC148Q8NFR7 591 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 CD99L2Q8TCZ2 262 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 PXYLP1Q8TE99 480 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 CUL5Q93034 780 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 DDX11Q96FC9 970 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 PKNOX2Q96KN3 472 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 MMP19Q99542 508 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 PORCNQ9H237 461 aa9.52□□□□□ -0.89
USP54-212ENST00000480210 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.52□□□□□ -0.89
USP54-212ENST00000480210 ESYT2A0FGR8 921 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 SCG2P13521 617 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 PDIA4P13667 645 aaKnown RBP9.51□□□□□ -0.89
USP54-212ENST00000480210 CAPN2P17655 700 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 GNA11P29992 359 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 RNF207Q6ZRF8 634 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 OTOP1Q7RTM1 612 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 ZNF467Q7Z7K2 595 aaPredicted RBP9.51□□□□□ -0.89
USP54-212ENST00000480210 DPP9Q86TI2 863 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 RAB11FIP4Q86YS3 637 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 CCDC82Q8N4S0 544 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 DNERQ8NFT8 737 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 BICD2Q8TD16 824 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 USP6NLQ92738 828 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 TRIM47Q96LD4 638 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 SLC26A6Q9BXS9 759 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 CPVLQ9H3G5 476 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 BARHL2Q9NY43 387 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 ADD3Q9UEY8 706 aaKnown RBP9.51□□□□□ -0.89
USP54-212ENST00000480210 TSKSQ9UJT2 592 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 GJD2Q9UKL4 321 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 RIPK3Q9Y572 518 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 TRIM17Q9Y577 477 aa9.51□□□□□ -0.89
USP54-212ENST00000480210 ASB14A6NK59 587 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 POTEB2H3BUK9 544 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 GCOM1H8Y6P7 765 aaPredicted RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 PIK3CDO00329 1044 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 FOSP01100 380 aaPredicted RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 POLR2MP0CAP2 368 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 CALML3P27482 149 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 ADORA2AP29274 412 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 SLC4A3P48751 1232 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 SLC35G1Q2M3R5 365 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 USH1GQ495M9 461 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 FBXO46Q6PJ61 603 aaPredicted RBP9.5□□□□□ -0.89
USP54-212ENST00000480210 HSCBQ8IWL3 235 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 SLAIN1Q8ND83 568 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 RAET1EQ8TD07 263 aa9.5□□□□□ -0.89
USP54-212ENST00000480210 CLEC4DQ8WXI8 215 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms