RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 UPF3AQ9H1J1 476 aaKnown RBP11.72□□□□□ -0.53
GPNMB-211ENST00000479625 WNT8AQ9H1J5 351 aa11.72□□□□□ -0.53
GPNMB-211ENST00000479625 HIPK3Q9H422 1215 aa11.72□□□□□ -0.53
GPNMB-211ENST00000479625 ARMT1Q9H993 441 aa11.72□□□□□ -0.53
GPNMB-211ENST00000479625 CERS4Q9HA82 394 aa11.72□□□□□ -0.53
GPNMB-211ENST00000479625 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.72□□□□□ -0.53
GPNMB-211ENST00000479625 SWAP70Q9UH65 585 aa11.72□□□□□ -0.53
GPNMB-211ENST00000479625 TCRBV5S4A2TA0A5A2 114 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 PRKAB2O43741 272 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 GJA9P57773 515 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 ATP8B2P98198 1209 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 GNASQ5JWF2 1037 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 SLC9C2Q5TAH2 1124 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 MSL3Q8N5Y2 521 aaKnown RBP11.71□□□□□ -0.53
GPNMB-211ENST00000479625 VWCEQ96DN2 955 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 MTIF3Q9H2K0 278 aaKnown RBP11.71□□□□□ -0.53
GPNMB-211ENST00000479625 C11orf16Q9NQ32 467 aa11.71□□□□□ -0.53
GPNMB-211ENST00000479625 ASTN1O14525 1302 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.7□□□□□ -0.54
GPNMB-211ENST00000479625 EPOPA6NHQ4 379 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 ZBBXA8MT70 800 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 ERC2O15083 957 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 COPB2P35606 906 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 CDK8P49336 464 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 TMEM31Q5JXX7 168 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 PPP1R15BQ5SWA1 713 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 CXCL17Q6UXB2 119 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 AACSQ86V21 672 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 DDX11Q96FC9 970 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 SCLYQ96I15 445 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 TEX13BQ9BXU2 312 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 KATNBL1Q9H079 304 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 GOPCQ9HD26 462 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 NOP58Q9Y2X3 529 aaKnown RBP11.7□□□□□ -0.54
GPNMB-211ENST00000479625 MTCH2Q9Y6C9 303 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 MUC6Q6W4X9 2439 aa11.7□□□□□ -0.54
GPNMB-211ENST00000479625 GRIN2DO15399 1336 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 B4GALT4O60513 344 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 ARHGEF15O94989 841 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 MBD4O95243 580 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 CHGBP05060 677 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 CA3P07451 260 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 AAK1Q2M2I8 961 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 ARMCX2Q7L311 632 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 CPXCR1Q8N123 301 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 PTCD2Q8WV60 388 aaKnown RBP11.69□□□□□ -0.54
GPNMB-211ENST00000479625 DNAJC2Q99543 621 aaKnown RBP11.69□□□□□ -0.54
GPNMB-211ENST00000479625 SLF1Q9BQI6 1058 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 NOC4LQ9BVI4 516 aaKnown RBP11.69□□□□□ -0.54
GPNMB-211ENST00000479625 TRPV6Q9H1D0 765 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 ABHD16BQ9H3Z7 469 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 SPC25Q9HBM1 224 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 EXOC6BQ9Y2D4 811 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 PCDHA11Q9Y5I1 949 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 SLC4A7Q9Y6M7 1214 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 DDX49Q9Y6V7 483 aaKnown RBP11.69□□□□□ -0.54
GPNMB-211ENST00000479625 SIP14410 1827 aa11.69□□□□□ -0.54
GPNMB-211ENST00000479625 GOLIM4O00461 696 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 PSMC6P62333 389 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 C12orf60Q5U649 245 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 TMED8Q6PL24 325 aaPredicted RBP11.68□□□□□ -0.54
GPNMB-211ENST00000479625 C16orf86Q6ZW13 317 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 SPRED2Q7Z698 418 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 CCDC144CPQ8IYA2 1237 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 SLC43A3Q8NBI5 491 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 CCDC17Q96LX7 622 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.68□□□□□ -0.54
GPNMB-211ENST00000479625 RAVER2Q9HCJ3 691 aaKnown RBP11.68□□□□□ -0.54
GPNMB-211ENST00000479625 IL1RAPL2Q9NP60 686 aa11.68□□□□□ -0.54
GPNMB-211ENST00000479625 RTN4Q9NQC3 1192 aaKnown RBP11.68□□□□□ -0.54
GPNMB-211ENST00000479625 ARIH1Q9Y4X5 557 aaPredicted RBP11.68□□□□□ -0.54
GPNMB-211ENST00000479625 USP17L12C9JPN9 530 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 USP17L21D6R901 530 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 IPO8O15397 1037 aaKnown RBP11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TLL1O43897 1013 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 ATP2A2P16615 1042 aaKnown RBP11.67□□□□□ -0.54
GPNMB-211ENST00000479625 ITGA7Q13683 1181 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TTLL4Q14679 1199 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TTF1Q15361 905 aaPredicted RBP11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TMEM63BQ5T3F8 832 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TLK2Q86UE8 772 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 ALYREFQ86V81 257 aaKnown RBP11.67□□□□□ -0.54
GPNMB-211ENST00000479625 ANKRD35Q8N283 1001 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 TET1Q8NFU7 2136 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 KANSL2Q9H9L4 492 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 HOMER2Q9NSB8 354 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 BRWD1Q9NSI6 2320 aa11.67□□□□□ -0.54
GPNMB-211ENST00000479625 PIEZO1Q92508 2521 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 NDUFB10O96000 172 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 CNTN2Q02246 1040 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 TNFAIP2Q03169 654 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 NOL8Q76FK4 1167 aaKnown RBP11.66□□□□□ -0.54
GPNMB-211ENST00000479625 STK11IPQ8N1F8 1099 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 ARNTL2Q8WYA1 636 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 KIFC2Q96AC6 838 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 AGBL1Q96MI9 1066 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 BCL11AQ9H165 835 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 CD320Q9NPF0 282 aa11.66□□□□□ -0.54
GPNMB-211ENST00000479625 ZBED9Q6R2W3 1325 aa11.65□□□□□ -0.54
GPNMB-211ENST00000479625 TRIP12Q14669 1992 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms