RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.21■□□□□ 0.19
HDAC6-220ENST00000477528 CD209Q9NNX6 404 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 NRXN3Q9Y4C0 1643 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 VIRMAQ69YN4 1812 aaKnown RBP16.21■□□□□ 0.19
HDAC6-220ENST00000477528 PIK3C2AO00443 1686 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 PRR29P0C7W0 189 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 ADRA2BP18089 450 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 CCNE1P24864 410 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 FUCA2Q9BTY2 467 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 LSM14BQ9BX40 385 aaKnown RBP16.21■□□□□ 0.19
HDAC6-220ENST00000477528 AMNQ9BXJ7 453 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 AK9Q5TCS8 1911 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 MPHOSPH6Q99547 160 aaKnown RBP16.21■□□□□ 0.19
HDAC6-220ENST00000477528 SENP2Q9HC62 589 aa16.21■□□□□ 0.19
HDAC6-220ENST00000477528 SOWAHDA6NJG2 315 aa16.21■□□□□ 0.18
HDAC6-220ENST00000477528 KRT31Q15323 416 aa16.21■□□□□ 0.18
HDAC6-220ENST00000477528 KMT5BQ4FZB7 885 aa16.21■□□□□ 0.18
HDAC6-220ENST00000477528 COA7Q96BR5 231 aa16.21■□□□□ 0.18
HDAC6-220ENST00000477528 MROH7-TTC4A0A0A0MT08 1334 aa16.21■□□□□ 0.18
HDAC6-220ENST00000477528 FLOT1O75955 427 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 ITPK1Q13572 414 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 ABCB5Q2M3G0 1257 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 SRGAP1Q7Z6B7 1085 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 EEF2KMTQ96G04 330 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 KANSL2Q9H9L4 492 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 PEAK1Q9H792 1746 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 GOLGA6L7A0A1B0GV03 622 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 TMEM232C9JQI7 657 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 HOXA7P31268 230 aaPredicted RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 CUL4BQ13620 913 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 TCP11X2Q5H9J9 407 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 RBM43Q6ZSC3 357 aaKnown RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 TRERF1Q96PN7 1200 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 TUBE1Q9UJT0 475 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 TNFAIP3P21580 790 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 CFAP58Q5T655 872 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 RC3H1Q5TC82 1133 aaKnown RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 GPIHBP1Q8IV16 184 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 SLC35F6Q8N357 371 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 CNKSR1Q969H4 720 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 SCLT1Q96NL6 688 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 QTRT2Q9H974 415 aaKnown RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 GBP2P32456 591 aaPredicted RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 ATP2C1P98194 919 aaPredicted RBP16.2■□□□□ 0.18
HDAC6-220ENST00000477528 FBXL16Q8N461 479 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 RIC8AQ9NPQ8 531 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 KIAA1024Q9UPX6 916 aa16.2■□□□□ 0.18
HDAC6-220ENST00000477528 DLG5Q8TDM6 1919 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 KIF1AQ12756 1690 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 GAS7O60861 476 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 MFAP3LO75121 409 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 XRCC5P13010 732 aaKnown RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 CFAP221Q4G0U5 840 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 TPH2Q8IWU9 490 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 DHX36Q9H2U1 1008 aaKnown RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 ARMCX3Q9UH62 379 aaPredicted RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 FOXN1O15353 648 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 KCTD1Q719H9 257 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 PHF20Q9BVI0 1012 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 OAS2P29728 719 aaKnown RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 SMTNP53814 917 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 MSL1Q68DK7 614 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 FAM76AQ8TAV0 307 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 COL5A2P05997 1499 aaPredicted RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 TRIM37O94972 964 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 CASP1P29466 404 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 TTLL12Q14166 644 aaPredicted RBP16.19■□□□□ 0.18
HDAC6-220ENST00000477528 SBK1Q52WX2 424 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 SEPT12Q8IYM1 358 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 KIFC2Q96AC6 838 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 ZBTB9Q96C00 473 aa16.19■□□□□ 0.18
HDAC6-220ENST00000477528 IFT20Q8IY31 132 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 PNMA6FA0A0J9YX94 578 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 SMC1AQ14683 1233 aaKnown RBP16.18■□□□□ 0.18
HDAC6-220ENST00000477528 MAN2A1Q16706 1144 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 C12orf60Q5U649 245 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 INTS5Q6P9B9 1019 aaKnown RBP16.18■□□□□ 0.18
HDAC6-220ENST00000477528 SRBD1Q8N5C6 995 aaKnown RBP16.18■□□□□ 0.18
HDAC6-220ENST00000477528 SLC44A5Q8NCS7 719 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 GDAQ9Y2T3 454 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 FMN2Q9NZ56 1722 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 EXOC3O60645 756 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 FGFR2P21802 821 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 SLC16A2P36021 539 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 ADAM9Q13443 819 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 CCDC26Q8TAB7 109 aa16.18■□□□□ 0.18
HDAC6-220ENST00000477528 TMEM110-MUSTN1A8MSY1 372 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 CCDC155Q8N6L0 562 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 PSMB7Q99436 277 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 BARHL2Q9NY43 387 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 MRPL11Q9Y3B7 192 aaKnown RBP16.17■□□□□ 0.18
HDAC6-220ENST00000477528 USP27XA6NNY8 438 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 POLR2MP0CAP2 368 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 ARMCX5Q6P1M9 558 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 BARGINQ6ZT62 677 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 NAP1L3Q99457 506 aaPredicted RBP16.17■□□□□ 0.18
HDAC6-220ENST00000477528 RSPH14Q9UHP6 348 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 ANAPC4Q9UJX5 808 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 EXOC7Q9UPT5 735 aa16.17■□□□□ 0.18
HDAC6-220ENST00000477528 COL4A3BPQ9Y5P4 624 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms