RNA–Protein interactions for RNA: ENST00000473969.6

USF1-205, Transcript of upstream transcription factor 1, humanhuman

TSL 5

Gene USF1, Length 1,092 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-205ENST00000473969 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.96■□□□□ 0.15
USF1-205ENST00000473969 A1CFQ9NQ94 594 aaKnown RBP15.96■□□□□ 0.15
USF1-205ENST00000473969 RBM28Q9NW13 759 aaKnown RBP15.96■□□□□ 0.15
USF1-205ENST00000473969 FLRT1Q9NZU1 646 aa15.96■□□□□ 0.15
USF1-205ENST00000473969 SEC63Q9UGP8 760 aaKnown RBP15.96■□□□□ 0.15
USF1-205ENST00000473969 MRPL11Q9Y3B7 192 aaKnown RBP15.96■□□□□ 0.15
USF1-205ENST00000473969 PTPDC1A2A3K4 754 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 ZBTB5O15062 677 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 TFRCP02786 760 aaKnown RBP15.95■□□□□ 0.14
USF1-205ENST00000473969 RXRAP19793 462 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 SMARCA1P28370 1054 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 CYP2C19P33261 490 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 ANAPC15P60006 121 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 COL9A3Q14050 684 aaPredicted RBP15.95■□□□□ 0.14
USF1-205ENST00000473969 APOA5Q6Q788 366 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 MCF2L2Q86YR7 1114 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 RAB11FIP4Q86YS3 637 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 MSL3Q8N5Y2 521 aaKnown RBP15.95■□□□□ 0.14
USF1-205ENST00000473969 PIBF1Q8WXW3 757 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 BRF1Q92994 677 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 RRP36Q96EU6 259 aaKnown RBP15.95■□□□□ 0.14
USF1-205ENST00000473969 TINF2Q9BSI4 451 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 RIOX1Q9H6W3 641 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 CNPY2Q9Y2B0 182 aa15.95■□□□□ 0.14
USF1-205ENST00000473969 PLXNB2O15031 1838 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 DNAJC25-GNG10A0A024R161 153 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 PNMA6FA0A0J9YX94 578 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 CCDC196A0A1B0GTZ2 297 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 GOLGA8AA7E2F4 631 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 GOLGA8BA8MQT2 603 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 PPP2R5BQ15173 497 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 RTN1Q16799 776 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 RNF207Q6ZRF8 634 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 ZNF467Q7Z7K2 595 aaPredicted RBP15.94■□□□□ 0.14
USF1-205ENST00000473969 DEFB118Q96PH6 123 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 PIGSQ96S52 555 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 MPHOSPH6Q99547 160 aaKnown RBP15.94■□□□□ 0.14
USF1-205ENST00000473969 SPZ1Q9BXG8 430 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 ZSWIM6Q9HCJ5 1215 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 CYP39A1Q9NYL5 469 aa15.94■□□□□ 0.14
USF1-205ENST00000473969 ADD3Q9UEY8 706 aaKnown RBP15.94■□□□□ 0.14
USF1-205ENST00000473969 POTEFA5A3E0 1075 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 ASB14A6NK59 587 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 B4DLN1 442 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 NFIBO00712 420 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 MSCO60682 206 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 SGPL1O95470 568 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 TAL1P17542 331 aaPredicted RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 EN2P19622 333 aaPredicted RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 CALML3P27482 149 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 GJA8P48165 433 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 MRPL12P52815 198 aaKnown RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 RCAN1P53805 252 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 APOBRQ0VD83 1088 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 BAATQ14032 418 aaPredicted RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 MAP3K21Q5TCX8 1036 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 RGS22Q8NE09 1264 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 U2AF1L4Q8WU68 220 aaKnown RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 MAF1Q9H063 256 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 UPF2Q9HAU5 1272 aaKnown RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 PAK6Q9NQU5 681 aaPredicted RBP15.93■□□□□ 0.14
USF1-205ENST00000473969 PDRG1Q9NUG6 133 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 BRPF3Q9ULD4 1205 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 PCDHA1Q9Y5I3 950 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 ZNF236Q9UL36 1845 aa15.93■□□□□ 0.14
USF1-205ENST00000473969 CCND3P30281 292 aaPredicted RBP15.92■□□□□ 0.14
USF1-205ENST00000473969 METAP2P50579 478 aaKnown RBP eCLIP15.92■□□□□ 0.14
USF1-205ENST00000473969 CNTN2Q02246 1040 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 FBXL16Q8N461 479 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 CCDC82Q8N4S0 544 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 SRBD1Q8N5C6 995 aaKnown RBP15.92■□□□□ 0.14
USF1-205ENST00000473969 CLEC4DQ8WXI8 215 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 MTMR8Q96EF0 704 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 UPF3BQ9BZI7 483 aaKnown RBP15.92■□□□□ 0.14
USF1-205ENST00000473969 NRBP1Q9UHY1 535 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 SYNGAP1Q96PV0 1343 aa15.92■□□□□ 0.14
USF1-205ENST00000473969 CYTH3O43739 400 aa15.91■□□□□ 0.14
USF1-205ENST00000473969 PLEKHA8P1O95397 391 aa15.91■□□□□ 0.14
USF1-205ENST00000473969 RPS6P62753 249 aaKnown RBP15.91■□□□□ 0.14
USF1-205ENST00000473969 MAMDC4Q6UXC1 1216 aa15.91■□□□□ 0.14
USF1-205ENST00000473969 TMTC3Q6ZXV5 915 aa15.91■□□□□ 0.14
USF1-205ENST00000473969 FAM133AQ8N9E0 248 aa15.91■□□□□ 0.14
USF1-205ENST00000473969 SEC24BO95487 1268 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 CFBP00751 764 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 CYBAP13498 195 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 C8orf34Q49A92 452 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 PRAMEF19Q5SWL8 479 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 ARMCX2Q7L311 632 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 CMTR1Q8N1G2 835 aaKnown RBP15.9■□□□□ 0.14
USF1-205ENST00000473969 SAMD3Q8N6K7 520 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 AGXT2Q9BYV1 514 aa15.9■□□□□ 0.14
USF1-205ENST00000473969 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.9■□□□□ 0.14
USF1-205ENST00000473969 DDX20Q9UHI6 824 aaKnown RBP15.9■□□□□ 0.14
USF1-205ENST00000473969 ZHX1Q9UKY1 873 aaPredicted RBP15.9■□□□□ 0.14
USF1-205ENST00000473969 LOC102724159A0A0B4J2E5 919 aa15.89■□□□□ 0.13
USF1-205ENST00000473969 SOWAHBA6NEL2 793 aa15.89■□□□□ 0.13
USF1-205ENST00000473969 SEPT4O43236 478 aa15.89■□□□□ 0.13
USF1-205ENST00000473969 RGS19P49795 217 aa15.89■□□□□ 0.13
USF1-205ENST00000473969 AKAP17AQ02040 695 aaKnown RBP15.89■□□□□ 0.13
USF1-205ENST00000473969 MLLT1Q03111 559 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms