RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ARMCX2Q7L311 632 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 TTC14Q96N46 770 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 IL25Q9H293 177 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 RANBP17Q9H2T7 1088 aaKnown RBP18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 FAM184BQ9ULE4 1060 aa18.48■□□□□ 0.55
CCDC88B-205ENST00000472524 B4E1Z4 1266 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 KDM4AO75164 1064 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 CLTBP09497 229 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 EPHB4P54760 987 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 IMMTQ16891 758 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 BTNL9Q6UXG8 535 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 CCDC144CPQ8IYA2 1237 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 FAM133AQ8N9E0 248 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 SYNRGQ9UMZ2 1314 aa18.47■□□□□ 0.55
CCDC88B-205ENST00000472524 ICAM1P05362 532 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 NSMFQ6X4W1 530 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 IQCA1Q86XH1 822 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 ABHD16BQ9H3Z7 469 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 CTNNA3Q9UI47 895 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 EYSQ5T1H1 3165 aa18.46■□□□□ 0.55
CCDC88B-205ENST00000472524 MYADML2A6NDP7 307 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 SOWAHBA6NEL2 793 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 ACLYP53396 1101 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 IRX5P78411 483 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 ZNF543Q08ER8 600 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 CCDC144BQ3MJ40 725 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 CDX2Q99626 313 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 SEMA6BQ9H3T3 888 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 CYP39A1Q9NYL5 469 aa18.45■□□□□ 0.54
CCDC88B-205ENST00000472524 KIAA0355O15063 1070 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 ADCY6O43306 1168 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 DUSP11O75319 330 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 GOLGA8HP0CJ92 632 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 SNHG28P0DPA3 235 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 SMAD3P84022 425 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 KCNA10Q16322 511 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 CCSAPQ6IQ19 270 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 KLHDC9Q8NEP7 349 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 TSEN34Q9BSV6 310 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 TTYH1Q9H313 450 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 TMEM39AQ9NV64 488 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 DDX49Q9Y6V7 483 aaKnown RBP18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 RAD50Q92878 1312 aa18.44■□□□□ 0.54
CCDC88B-205ENST00000472524 ASB14A6NK59 587 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 C6orf222P0C671 652 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 RAG1P15918 1043 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 NT5C2P49902 561 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 FAAP100Q0VG06 881 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 CCDC178Q5BJE1 867 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 ANKRD33Q7Z3H0 272 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 DGKHQ86XP1 1220 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 PNMA1Q8ND90 353 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 RNPC3Q96LT9 517 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 PURBQ96QR8 312 aaKnown RBP18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 ZSCAN10Q96SZ4 725 aaPredicted RBP18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 KATNBL1Q9H079 304 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 KAT14Q9H8E8 782 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 STARD7Q9NQZ5 370 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 CDH23Q9H251 3354 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 ASTN1O14525 1302 aa18.43■□□□□ 0.54
CCDC88B-205ENST00000472524 MOXD2PA6NHM9 499 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 NFIBO00712 420 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 GPATCH4Q5T3I0 446 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 ENAHQ8N8S7 591 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 NUP133Q8WUM0 1156 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 RUFY2Q8WXA3 655 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 COL25A1Q9BXS0 654 aaPredicted RBP18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 KRT23Q9C075 422 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 CPVLQ9H3G5 476 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 SPC25Q9HBM1 224 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 ZSWIM5Q9P217 1185 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 BAZ2BQ9UIF8 2168 aaKnown RBP18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 TNKSO95271 1327 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 CUL9Q8IWT3 2517 aa18.42■□□□□ 0.54
CCDC88B-205ENST00000472524 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 PTPDC1A2A3K4 754 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 CHMLP26374 656 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 BAATQ14032 418 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 NOL8Q76FK4 1167 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 EEPD1Q7L9B9 569 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 TOX2Q96NM4 488 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 UBAC1Q9BSL1 405 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 UBA5Q9GZZ9 404 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 CNNM2Q9H8M5 875 aa18.41■□□□□ 0.54
CCDC88B-205ENST00000472524 DCDC2CA8MYV0 355 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 TNFAIP2Q03169 654 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 PTH1RQ03431 593 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 FPGSQ05932 587 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 USH1GQ495M9 461 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 SLC30A10Q6XR72 485 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 FBXO16Q8IX29 292 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 MAFAQ8NHW3 353 aaPredicted RBP18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 MYLIPQ8WY64 445 aa18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 UPF3AQ9H1J1 476 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-205ENST00000472524 VCANP13611 3396 aa18.39■□□□□ 0.54
CCDC88B-205ENST00000472524 ASGR1P07306 291 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 CALML3P27482 149 aa18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 CST5P28325 142 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-205ENST00000472524 GJA9P57773 515 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms