RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 PGK2P07205 417 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 ASGR1P07306 291 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 CST5P28325 142 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 NHLH1Q02575 133 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 VPS53Q5VIR6 699 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 SIAH1Q8IUQ4 282 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 RUFY2Q8WXA3 655 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 MMP19Q99542 508 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 NAPBQ9H115 298 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 GREB1LQ9C091 1923 aaPredicted RBP14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 MCM3APO60318 1980 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 CD4P01730 458 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 HSPD1P10809 573 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 AKR1B1P15121 316 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 ICA1Q05084 483 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 RPUSD2Q8IZ73 545 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 KCNH6Q9H252 994 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 IL25Q9H293 177 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 KANSL2Q9H9L4 492 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 ZMYM6O95789 1325 aa14.09□□□□□ -0.15
SQSTM1-206ENST00000466342 MYADML2A6NDP7 307 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 FLOT1O75955 427 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 C6orf222P0C671 652 aaPredicted RBP14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 KCTD2Q14681 263 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 TMEM132BQ14DG7 1078 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 ALX1Q15699 326 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 ATG4CQ96DT6 458 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 VCPKMTQ9H867 229 aa14.08□□□□□ -0.16
SQSTM1-206ENST00000466342 MINDY4BA8MYZ0 360 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 SGSM2O43147 1006 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 SNAI1O95863 264 aaPredicted RBP14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 IRX5P78411 483 aaPredicted RBP14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 TMEM67Q5HYA8 995 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 KIAA1755Q5JYT7 1200 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 KRT40Q6A162 431 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 RIOX2Q8IUF8 465 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 MSL3Q8N5Y2 521 aaKnown RBP14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 UIMC1Q96RL1 719 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 DSCC1Q9BVC3 393 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 HIPK3Q9H422 1215 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 CERS4Q9HA82 394 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 MKNK2Q9HBH9 465 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 SPC25Q9HBM1 224 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 ZNF287Q9HBT7 754 aa14.07□□□□□ -0.16
SQSTM1-206ENST00000466342 WDR46O15213 610 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 CDC45O75419 566 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 FGAP02671 866 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 EEF2P13639 858 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 ATP2A2P16615 1042 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 GJA9P57773 515 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 PPARAQ07869 468 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 GNASQ5JWF2 1037 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 FBXL18Q96ME1 805 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 UPF3AQ9H1J1 476 aaKnown RBP14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 ADAMTS5Q9UNA0 930 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 UMODL1Q5DID0 1318 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 BRWD1Q9NSI6 2320 aa14.06□□□□□ -0.16
SQSTM1-206ENST00000466342 MYH4Q9Y623 1939 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 EPOPA6NHQ4 379 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 ZBBXA8MT70 800 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 CA3P07451 260 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 ALADP13716 330 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 RASA1P20936 1047 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 CCL23P55773 120 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 CSPP1Q1MSJ5 1256 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 CASC1Q6TDU7 716 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 MAMDC4Q6UXC1 1216 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 CLEC10AQ8IUN9 316 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 GJD3Q8N144 294 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 SLC43A3Q8NBI5 491 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 NYAP2Q9P242 653 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 SCN5AQ14524 2016 aa14.05□□□□□ -0.16
SQSTM1-206ENST00000466342 SLC3A2P08195 630 aaKnown RBP14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 STAT3P40763 770 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 SAMD1Q6SPF0 538 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 FAM178BQ8IXR5 827 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 ZNF444Q8N0Y2 327 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 SPICE1Q8N0Z3 855 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 ESYT1Q9BSJ8 1104 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 GOPCQ9HD26 462 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 ANAPC4Q9UJX5 808 aa14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 ZHX1Q9UKY1 873 aaPredicted RBP14.04□□□□□ -0.16
SQSTM1-206ENST00000466342 ADCY6O43306 1168 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 COPB2P35606 906 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 TAP1Q03518 808 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 ACVR2BQ13705 512 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 STK11IPQ8N1F8 1099 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 ARNTL2Q8WYA1 636 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 VWCEQ96DN2 955 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 NOC4LQ9BVI4 516 aaKnown RBP14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 WNT8AQ9H1J5 351 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 GTF3C3Q9Y5Q9 886 aa14.03□□□□□ -0.16
SQSTM1-206ENST00000466342 NKX3-2P78367 333 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 PTH1RQ03431 593 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 CTDSPL2Q05D32 466 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 PDE4BQ07343 736 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 GRB10Q13322 594 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 CCDC144BQ3MJ40 725 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 MKL1Q969V6 931 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms