RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 C6orf222P0C671 652 aaPredicted RBP16.37■□□□□ 0.21
USP4-206ENST00000461553 GPATCH4Q5T3I0 446 aaKnown RBP16.37■□□□□ 0.21
USP4-206ENST00000461553 DGKHQ86XP1 1220 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 NUP133Q8WUM0 1156 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 KRT23Q9C075 422 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 CNNM2Q9H8M5 875 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 STARD7Q9NQZ5 370 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 PDLIM7Q9NR12 457 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 CYP39A1Q9NYL5 469 aa16.37■□□□□ 0.21
USP4-206ENST00000461553 LAMA2P24043 3122 aaKnown RBP16.36■□□□□ 0.21
USP4-206ENST00000461553 SOWAHBA6NEL2 793 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 SNHG28P0DPA3 235 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 CST5P28325 142 aaPredicted RBP16.36■□□□□ 0.21
USP4-206ENST00000461553 PNMA1Q8ND90 353 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 RUFY2Q8WXA3 655 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 LRCH3Q96II8 777 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 KAT14Q9H8E8 782 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 TNKSO95271 1327 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 WDR19Q8NEZ3 1342 aa16.36■□□□□ 0.21
USP4-206ENST00000461553 ADCY6O43306 1168 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 ACLYP53396 1101 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 LRIT3Q3SXY7 679 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 PCSK9Q8NBP7 692 aaKnown RBP16.35■□□□□ 0.21
USP4-206ENST00000461553 GLT1D1Q96MS3 346 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 ZSCAN10Q96SZ4 725 aaPredicted RBP16.35■□□□□ 0.21
USP4-206ENST00000461553 UBAC1Q9BSL1 405 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 KATNBL1Q9H079 304 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 UPF3AQ9H1J1 476 aaKnown RBP16.35■□□□□ 0.21
USP4-206ENST00000461553 IL25Q9H293 177 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 ADD3Q9UEY8 706 aaKnown RBP16.35■□□□□ 0.21
USP4-206ENST00000461553 KIAA1217Q5T5P2 1943 aa16.35■□□□□ 0.21
USP4-206ENST00000461553 PTPDC1A2A3K4 754 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 MYADML2A6NDP7 307 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 NFIBO00712 420 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 PQBP1O60828 265 aaKnown RBP16.34■□□□□ 0.21
USP4-206ENST00000461553 CLTBP09497 229 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 GJA9P57773 515 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 NOL8Q76FK4 1167 aaKnown RBP16.34■□□□□ 0.21
USP4-206ENST00000461553 FBXO16Q8IX29 292 aaPredicted RBP16.34■□□□□ 0.21
USP4-206ENST00000461553 ENAHQ8N8S7 591 aaPredicted RBP16.34■□□□□ 0.21
USP4-206ENST00000461553 KLHDC9Q8NEP7 349 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 ASTN1O14525 1302 aa16.34■□□□□ 0.21
USP4-206ENST00000461553 GOLGA8HP0CJ92 632 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 TNFAIP2Q03169 654 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 TLE2Q04725 743 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 BAATQ14032 418 aaPredicted RBP16.33■□□□□ 0.2
USP4-206ENST00000461553 KCNA10Q16322 511 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 ASPRV1Q53RT3 343 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 TLK2Q86UE8 772 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 MPHOSPH6Q99547 160 aaKnown RBP16.33■□□□□ 0.2
USP4-206ENST00000461553 VTA1Q9NP79 307 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 MROH7Q68CQ1 1323 aa16.33■□□□□ 0.2
USP4-206ENST00000461553 LOC102724159A0A0B4J2E5 919 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 ASGR1P07306 291 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 CALML3P27482 149 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 ALDH5A1P51649 535 aaPredicted RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 TRDNQ13061 729 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 PWP2Q15269 919 aaKnown RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 CDC37Q16543 378 aaPredicted RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 USH1GQ495M9 461 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 GNASQ5JWF2 1037 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 IFIT1BQ5T764 474 aaKnown RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 CCSAPQ6IQ19 270 aaPredicted RBP16.32■□□□□ 0.2
USP4-206ENST00000461553 GPR153Q6NV75 609 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 SLC30A10Q6XR72 485 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 RNF207Q6ZRF8 634 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 EEPD1Q7L9B9 569 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 ANKS1AQ92625 1134 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 ZSWIM5Q9P217 1185 aa16.32■□□□□ 0.2
USP4-206ENST00000461553 BAZ2BQ9UIF8 2168 aaKnown RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 ELP1O95163 1332 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 A0A0U1RQG5 324 aaPredicted RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 DCDC2CA8MYV0 355 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 DHX16O60231 1041 aaKnown RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 PARP1P09874 1014 aaKnown RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 CHMLP26374 656 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 SH3RF1Q7Z6J0 888 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 BADQ92934 168 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 VTI1AQ96AJ9 217 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 PURBQ96QR8 312 aaKnown RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 AP5M1Q9H0R1 490 aa16.31■□□□□ 0.2
USP4-206ENST00000461553 DDX49Q9Y6V7 483 aaKnown RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 U3KPZ7 1027 aaPredicted RBP16.31■□□□□ 0.2
USP4-206ENST00000461553 ABCB11O95342 1321 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 TRIM43BA6NCK2 446 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 IRX5P78411 483 aaPredicted RBP16.3■□□□□ 0.2
USP4-206ENST00000461553 ANKRD33Q7Z3H0 272 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 MORC4Q8TE76 937 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 CLEC4DQ8WXI8 215 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 TRIM43Q96BQ3 446 aaPredicted RBP16.3■□□□□ 0.2
USP4-206ENST00000461553 TOX2Q96NM4 488 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 UBA5Q9GZZ9 404 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 CPVLQ9H3G5 476 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 TMEM39AQ9NV64 488 aa16.3■□□□□ 0.2
USP4-206ENST00000461553 GNEQ9Y223 722 aaKnown RBP16.3■□□□□ 0.2
USP4-206ENST00000461553 KIAA0355O15063 1070 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 ZEB2O60315 1214 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 RAG1P15918 1043 aa16.29■□□□□ 0.2
USP4-206ENST00000461553 SMPD1P17405 629 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms