RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CATSPERGQ6ZRH7 1159 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 RASGRP2Q7LDG7 609 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 FAM160B2Q86V87 743 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 GTF3C2Q8WUA4 911 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-214ENST00000454018 NUP133Q8WUM0 1156 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 NUP88Q99567 741 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-214ENST00000454018 PTPN18Q99952 460 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 FEM1BQ9UK73 627 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 ZNF236Q9UL36 1845 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 COL9A1P20849 921 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 MAP2K1Q02750 393 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 IKQ13123 557 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 TAF1CQ15572 869 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 LBX2Q6XYB7 198 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 KCTD1Q719H9 257 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 DNAJC5GQ8N7S2 189 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 SMCR8Q8TEV9 937 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 CHURC1Q8WUH1 139 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 ZNF274Q96GC6 653 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 SLF1Q9BQI6 1058 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 MYL10Q9BUA6 226 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 ASCC2Q9H1I8 757 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 ALG2Q9H553 416 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 RBM28Q9NW13 759 aaKnown RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 BRPF3Q9ULD4 1205 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 PPP1R9AQ9ULJ8 1098 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 NAP1L2Q9ULW6 460 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 ZSWIM8A7E2V4 1837 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 PCNTO95613 3336 aa10.19□□□□□ -0.78
SYNE1-214ENST00000454018 FRMPD2Q68DX3 1309 aaPredicted RBP10.19□□□□□ -0.78
SYNE1-214ENST00000454018 CCDC196A0A1B0GTZ2 297 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 GOLGA8AA7E2F4 631 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 TMEM232C9JQI7 657 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 MCM2P49736 904 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 GNAQP50148 359 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 METAP2P50579 478 aaKnown RBP eCLIP10.18□□□□□ -0.78
SYNE1-214ENST00000454018 HERVK_113P62684 666 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 COG2Q14746 738 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 RTN1Q16799 776 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 BTNL9Q6UXG8 535 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 NUDT18Q6ZVK8 323 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 MB21D1Q8N884 522 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 PRPF38AQ8NAV1 312 aaKnown RBP10.18□□□□□ -0.78
SYNE1-214ENST00000454018 FANCBQ8NB91 859 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 CFHR5Q9BXR6 569 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 SAGE1Q9NXZ1 904 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 MAD2L2Q9UI95 211 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 TSKSQ9UJT2 592 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 LCTP09848 1927 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 ADGRA2Q96PE1 1338 aa10.18□□□□□ -0.78
SYNE1-214ENST00000454018 KLRF2D3W0D1 207 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CA12O43570 354 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 GOLGA8HP0CJ92 632 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 FDX1P10109 184 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 RXRAP19793 462 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 DNAJB2P25686 324 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 GCLCP48506 637 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 SYDE2Q5VT97 1194 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 UCN2Q96RP3 112 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 LZTS2Q9BRK4 669 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 ZFYVE28Q9HCC9 887 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 FBXO28Q9NVF7 368 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 HOXC10Q9NYD6 342 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 HPS5Q9UPZ3 1129 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CYP2C8P10632 490 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 SMARCA1P28370 1054 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 PDIA3P30101 505 aaKnown RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CRHR2Q13324 411 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 TMTC3Q6ZXV5 915 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 NOL8Q76FK4 1167 aaKnown RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 RAB11FIP4Q86YS3 637 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CCDC144CPQ8IYA2 1237 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 STAG2Q8N3U4 1231 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 JMYQ8N9B5 988 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 KHSRPQ92945 711 aaKnown RBP eCLIP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 KIFC2Q96AC6 838 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CHMP4CQ96CF2 233 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 ATG4CQ96DT6 458 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 SPZ1Q9BXG8 430 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 SLKQ9H2G2 1235 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 TMEM134Q9H6X4 195 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 VRTNQ9H8Y1 702 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 SH2B1Q9NRF2 756 aaPredicted RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 TFIP11Q9UBB9 837 aaKnown RBP10.17□□□□□ -0.78
SYNE1-214ENST00000454018 TPCN1Q9ULQ1 816 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 ADAMTS5Q9UNA0 930 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 LIMCH1Q9UPQ0 1083 aa10.17□□□□□ -0.78
SYNE1-214ENST00000454018 CNTNAP5Q8WYK1 1306 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 VWA5AO00534 786 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 DHX16O60231 1041 aaKnown RBP10.16□□□□□ -0.78
SYNE1-214ENST00000454018 TLR2O60603 784 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 PFKFB2O60825 505 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 NUDT7P0C024 238 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 OAZ1P54368 228 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 FAM110CQ1W6H9 321 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 TTBK2Q6IQ55 1244 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 SND1Q7KZF4 910 aaKnown RBP eCLIP10.16□□□□□ -0.78
SYNE1-214ENST00000454018 GTF3C6Q969F1 213 aa10.16□□□□□ -0.78
SYNE1-214ENST00000454018 ZSCAN31Q96LW9 406 aaPredicted RBP10.16□□□□□ -0.78
SYNE1-214ENST00000454018 P2RX7Q99572 595 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms