RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 DCAF4Q8WV16 495 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 FGD4Q96M96 766 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 GAS2L1Q99501 681 aaPredicted RBP15.7■□□□□ 0.1
HMGB3-204ENST00000448905 MPHOSPH6Q99547 160 aaKnown RBP15.7■□□□□ 0.1
HMGB3-204ENST00000448905 PPP1R12CQ9BZL4 782 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 KATNBL1Q9H079 304 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 HELLSQ9NRZ9 838 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 CYP39A1Q9NYL5 469 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 MSRAQ9UJ68 235 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 ANAPC4Q9UJX5 808 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 MTMR7Q9Y216 660 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 PCDHB15Q9Y5E8 787 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 PLIN4Q96Q06 1357 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 COL11A1P12107 1806 aaPredicted RBP15.7■□□□□ 0.1
HMGB3-204ENST00000448905 ZNF536O15090 1300 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 MYH8P13535 1937 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 ADCY6O43306 1168 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 ICAM1P05362 532 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 IRX5P78411 483 aaPredicted RBP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 ALX1Q15699 326 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 CCDC96Q2M329 555 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 BRDTQ58F21 947 aaPredicted RBP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 KIAA1211Q6ZU35 1233 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 C16orf59Q7L2K0 433 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 RPUSD2Q8IZ73 545 aaKnown RBP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 HIPK3Q9H422 1215 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 VTA1Q9NP79 307 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 IL23AQ9NPF7 189 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 GPHNQ9NQX3 736 aaPredicted RBP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 IL17RBQ9NRM6 502 aa15.69■□□□□ 0.1
HMGB3-204ENST00000448905 GNEQ9Y223 722 aaKnown RBP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.69■□□□□ 0.1
HMGB3-204ENST00000448905 A0A0G2JMZ2 1700 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 LOC102724159A0A0B4J2E5 919 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.68■□□□□ 0.1
HMGB3-204ENST00000448905 B4DLN1 442 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 ORC4O43929 436 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 CD4P01730 458 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 SUPT20HL2P0C7V6 817 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 CYP2C18P33260 490 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 MRPL12P52815 198 aaKnown RBP15.68■□□□□ 0.1
HMGB3-204ENST00000448905 PWP2Q15269 919 aaKnown RBP15.68■□□□□ 0.1
HMGB3-204ENST00000448905 RAB30Q15771 203 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 EEPD1Q7L9B9 569 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 SLC43A3Q8NBI5 491 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 OTUD7AQ8TE49 926 aaPredicted RBP15.68■□□□□ 0.1
HMGB3-204ENST00000448905 INCENPQ9NQS7 918 aa15.68■□□□□ 0.1
HMGB3-204ENST00000448905 PARP14Q460N5 1801 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 CTAGE5O15320 804 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 NMT2O60551 498 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 ACRP10323 421 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 TOP1P11387 765 aaKnown RBP15.67■□□□□ 0.1
HMGB3-204ENST00000448905 SMPD1P17405 629 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 SNAP25P60880 206 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 MCMDC2Q4G0Z9 681 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 RRP12Q5JTH9 1297 aaKnown RBP15.67■□□□□ 0.1
HMGB3-204ENST00000448905 HERVK_113Q902F9 699 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 TTC14Q96N46 770 aa15.67■□□□□ 0.1
HMGB3-204ENST00000448905 FGAP02671 866 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 FGRP09769 529 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 PCP11498 1178 aaKnown RBP15.66■□□□□ 0.1
HMGB3-204ENST00000448905 NOVP48745 357 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 BAATQ14032 418 aaPredicted RBP15.66■□□□□ 0.1
HMGB3-204ENST00000448905 MUM1L1Q5H9M0 696 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 RASIP1Q5U651 963 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 SYDE2Q5VT97 1194 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 TAPT1Q6NXT6 567 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 BTNL9Q6UXG8 535 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 PBX4Q9BYU1 374 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 WDR11Q9BZH6 1224 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 SLC28A3Q9HAS3 691 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 PDGFCQ9NRA1 345 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 TCP11L1Q9NUJ3 509 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 POLR3EQ9NVU0 708 aa15.66■□□□□ 0.1
HMGB3-204ENST00000448905 PLXNA1Q9UIW2 1896 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 PTPDC1A2A3K4 754 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 SLC16A2P36021 539 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 CPT1AP50416 773 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 MFAP1P55081 439 aaKnown RBP15.65■□□□□ 0.1
HMGB3-204ENST00000448905 DUSP28Q4G0W2 176 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 FBXO16Q8IX29 292 aaPredicted RBP15.65■□□□□ 0.1
HMGB3-204ENST00000448905 MORC4Q8TE76 937 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 TMEM47Q9BQJ4 181 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 RANBP17Q9H2T7 1088 aaKnown RBP15.65■□□□□ 0.1
HMGB3-204ENST00000448905 GPCPD1Q9NPB8 672 aa15.65■□□□□ 0.1
HMGB3-204ENST00000448905 GRXCR1A8MXD5 290 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 KPNA6O60684 536 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 CCL23P55773 120 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 VPS53Q5VIR6 699 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 MFSD6Q6ZSS7 791 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 PRUNE2Q8WUY3 3088 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 TRPV6Q9H1D0 765 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 RNF41Q9H4P4 317 aaPredicted RBP15.64■□□□□ 0.09
HMGB3-204ENST00000448905 SLC4A7Q9Y6M7 1214 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 ASTN1O14525 1302 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 RAD50Q92878 1312 aa15.64■□□□□ 0.09
HMGB3-204ENST00000448905 NKRFO15226 690 aaKnown RBP eCLIP15.63■□□□□ 0.091e-7■■■■□ 25.2
HMGB3-204ENST00000448905 CALML3P27482 149 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 PBX2P40425 430 aa15.63■□□□□ 0.09
HMGB3-204ENST00000448905 NT5C2P49902 561 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms