RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 TKFCQ3LXA3 575 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 CCDC144BQ3MJ40 725 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 TMEM63BQ5T3F8 832 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 SLC39A5Q6ZMH5 540 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 STOX1Q6ZVD7 989 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 MSL3Q8N5Y2 521 aaKnown RBP12.78□□□□□ -0.36
SF3A1-203ENST00000444440 ARRDC4Q8NCT1 418 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 PNMA1Q8ND90 353 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 CLEC4DQ8WXI8 215 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 ANKS1AQ92625 1134 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 UBA5Q9GZZ9 404 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 SENP2Q9HC62 589 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 CNPY2Q9Y2B0 182 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 TNKSO95271 1327 aa12.78□□□□□ -0.36
SF3A1-203ENST00000444440 CTAGE5O15320 804 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 SGSM2O43147 1006 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 MDM2Q00987 491 aaPredicted RBP12.77□□□□□ -0.37
SF3A1-203ENST00000444440 SEC23AQ15436 765 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 TRIM60Q495X7 471 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 CCSAPQ6IQ19 270 aaPredicted RBP12.77□□□□□ -0.37
SF3A1-203ENST00000444440 NSMFQ6X4W1 530 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 SLC30A10Q6XR72 485 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 DGKHQ86XP1 1220 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 KLHDC9Q8NEP7 349 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 ZSCAN10Q96SZ4 725 aaPredicted RBP12.77□□□□□ -0.37
SF3A1-203ENST00000444440 PHF24Q9UPV7 400 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 ATP11BQ9Y2G3 1177 aa12.77□□□□□ -0.37
SF3A1-203ENST00000444440 A0A1W2PQ45 241 aaPredicted RBP12.76□□□□□ -0.37
SF3A1-203ENST00000444440 A0A1W2PQY0 241 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 BMP8BP34820 402 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 BAATQ14032 418 aaPredicted RBP12.76□□□□□ -0.37
SF3A1-203ENST00000444440 SH3RF1Q7Z6J0 888 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 IQCA1Q86XH1 822 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 STAG2Q8N3U4 1231 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 LRCH3Q96II8 777 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 ABHD16BQ9H3Z7 469 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 PDGFCQ9NRA1 345 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 CTNNA3Q9UI47 895 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 FAM184BQ9ULE4 1060 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 SCN10AQ9Y5Y9 1956 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 SCN5AQ14524 2016 aa12.76□□□□□ -0.37
SF3A1-203ENST00000444440 DUSP11O75319 330 aaKnown RBP12.75□□□□□ -0.37
SF3A1-203ENST00000444440 TRIP12Q14669 1992 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-203ENST00000444440 SLC35G1Q2M3R5 365 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 EEPD1Q7L9B9 569 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 FBXO16Q8IX29 292 aaPredicted RBP12.75□□□□□ -0.37
SF3A1-203ENST00000444440 TBC1D5Q92609 795 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 KRT23Q9C075 422 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 UPF3AQ9H1J1 476 aaKnown RBP12.75□□□□□ -0.37
SF3A1-203ENST00000444440 KAT14Q9H8E8 782 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 PDLIM7Q9NR12 457 aa12.75□□□□□ -0.37
SF3A1-203ENST00000444440 TRIM43BA6NCK2 446 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 ITGB8P26012 769 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 ALDH5A1P51649 535 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-203ENST00000444440 ACLYP53396 1101 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 ANTXR2P58335 489 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 KCNA10Q16322 511 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 CDC37Q16543 378 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-203ENST00000444440 USH1GQ495M9 461 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 GPATCH4Q5T3I0 446 aaKnown RBP12.74□□□□□ -0.37
SF3A1-203ENST00000444440 TAPT1Q6NXT6 567 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 CHST3Q7LGC8 479 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 RNF180Q86T96 592 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 ADGRF4Q8IZF3 695 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 MORC4Q8TE76 937 aa12.74□□□□□ -0.37
SF3A1-203ENST00000444440 TRIM43Q96BQ3 446 aaPredicted RBP12.74□□□□□ -0.37
SF3A1-203ENST00000444440 GNEQ9Y223 722 aaKnown RBP12.74□□□□□ -0.37
SF3A1-203ENST00000444440 WDR19Q8NEZ3 1342 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 A0A1W2PPC1 479 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 PTPDC1A2A3K4 754 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 E7EWF7 191 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 ASGR1P07306 291 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 C6orf222P0C671 652 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-203ENST00000444440 SMPD1P17405 629 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 CALML3P27482 149 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 CST5P28325 142 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-203ENST00000444440 GJA9P57773 515 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 BEX3Q00994 111 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 TLE2Q04725 743 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 C1orf53Q5VUE5 145 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 RUFY2Q8WXA3 655 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 MAP4K1Q92918 833 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 LSG1Q9H089 658 aaKnown RBP12.73□□□□□ -0.37
SF3A1-203ENST00000444440 CNNM2Q9H8M5 875 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 JMJD4Q9H9V9 463 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 GPHNQ9NQX3 736 aaPredicted RBP12.73□□□□□ -0.37
SF3A1-203ENST00000444440 COL20A1Q9P218 1284 aa12.73□□□□□ -0.37
SF3A1-203ENST00000444440 RBM8AQ9Y5S9 174 aaKnown RBP12.73□□□□□ -0.37
SF3A1-203ENST00000444440 TANC1Q9C0D5 1861 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 ASB14A6NK59 587 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 PPP1R11O60927 126 aaPredicted RBP12.72□□□□□ -0.37
SF3A1-203ENST00000444440 RPS6P62753 249 aaKnown RBP12.72□□□□□ -0.37
SF3A1-203ENST00000444440 TNFAIP2Q03169 654 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 QRICH1Q2TAL8 776 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 ASPRV1Q53RT3 343 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 CCDC178Q5BJE1 867 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 IFIT1BQ5T764 474 aaKnown RBP12.72□□□□□ -0.37
SF3A1-203ENST00000444440 MB21D2Q8IYB1 491 aaPredicted RBP12.72□□□□□ -0.37
SF3A1-203ENST00000444440 TDHQ8IZJ6 230 aa12.72□□□□□ -0.37
SF3A1-203ENST00000444440 UBAC1Q9BSL1 405 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms