RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 TFAP4Q01664 338 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 FPGSQ05932 587 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 SNX17Q15036 470 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 CCDC96Q2M329 555 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 C1orf53Q5VUE5 145 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 PCSK9Q8NBP7 692 aaKnown RBP9.19□□□□□ -0.94
VPS50-203ENST00000436177 REPS2Q8NFH8 660 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 NEDD1Q8NHV4 660 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 GLT1D1Q96MS3 346 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 TSEN34Q9BSV6 310 aaKnown RBP9.19□□□□□ -0.94
VPS50-203ENST00000436177 ACAD9Q9H845 621 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 SLC38A10Q9HBR0 1119 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.19□□□□□ -0.94
VPS50-203ENST00000436177 MROH7Q68CQ1 1323 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 SYNRGQ9UMZ2 1314 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 PLIN4Q96Q06 1357 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 DNAH12Q6ZR08 3092 aa9.19□□□□□ -0.94
VPS50-203ENST00000436177 IGKV6D-41A0A0C4DH26 115 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 RANBP6O60518 1105 aaKnown RBP9.18□□□□□ -0.94
VPS50-203ENST00000436177 DUSP11O75319 330 aaKnown RBP9.18□□□□□ -0.94
VPS50-203ENST00000436177 ZNF865P0CJ78 1059 aaPredicted RBP9.18□□□□□ -0.94
VPS50-203ENST00000436177 FOSBP53539 338 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 ACVR2BQ13705 512 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 SHHQ15465 462 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 TKFCQ3LXA3 575 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 GNASQ5JWF2 1037 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 ZMYM1Q5SVZ6 1142 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 ARMCX2Q7L311 632 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 CHMP4CQ96CF2 233 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 GMCL1Q96IK5 515 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 ABHD16BQ9H3Z7 469 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 RNF146Q9NTX7 359 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 MTMR7Q9Y216 660 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 RIPK3Q9Y572 518 aa9.18□□□□□ -0.94
VPS50-203ENST00000436177 FRMPD3Q5JV73 1810 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 DNAJC25-GNG10A0A024R161 153 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 TRIM43BA6NCK2 446 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 ASB14A6NK59 587 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 KIAA0355O15063 1070 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 TLR3O15455 904 aaKnown RBP9.17□□□□□ -0.94
VPS50-203ENST00000436177 ADAMTS4O75173 837 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 ALAS1P13196 640 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 MCCP23508 829 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 PDE4AP27815 886 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 SMAD3P84022 425 aaKnown RBP9.17□□□□□ -0.94
VPS50-203ENST00000436177 KCNA10Q16322 511 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 CCDC144BQ3MJ40 725 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 C9orf50Q5SZB4 431 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 ANKRD45Q5TZF3 282 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 MAMDC4Q6UXC1 1216 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 SH3RF1Q7Z6J0 888 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 PI4K2BQ8TCG2 481 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 OTUD7AQ8TE49 926 aaPredicted RBP9.17□□□□□ -0.94
VPS50-203ENST00000436177 MKL1Q969V6 931 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 TRIM43Q96BQ3 446 aaPredicted RBP9.17□□□□□ -0.94
VPS50-203ENST00000436177 SEC62Q99442 399 aaKnown RBP9.17□□□□□ -0.94
VPS50-203ENST00000436177 COL6A3P12111 3177 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 MYH7P12883 1935 aa9.17□□□□□ -0.94
VPS50-203ENST00000436177 ELP1O95163 1332 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 RLFQ13129 1914 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 A0A0U1RQG5 324 aaPredicted RBP9.16□□□□□ -0.94
VPS50-203ENST00000436177 GOLGA8CPA6NN73 597 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 ZEB2O60315 1214 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 SNAI1O95863 264 aaPredicted RBP9.16□□□□□ -0.94
VPS50-203ENST00000436177 CST5P28325 142 aaPredicted RBP9.16□□□□□ -0.94
VPS50-203ENST00000436177 RRP1P56182 461 aaKnown RBP9.16□□□□□ -0.94
VPS50-203ENST00000436177 PPIGQ13427 754 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS50-203ENST00000436177 KCTD1Q719H9 257 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 ANKRD33Q7Z3H0 272 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 CCDC144CPQ8IYA2 1237 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 STAG1Q8WVM7 1258 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 EVI5LQ96CN4 794 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 TOX2Q96NM4 488 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 TRERF1Q96PN7 1200 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 LARP6Q9BRS8 491 aaKnown RBP9.16□□□□□ -0.94
VPS50-203ENST00000436177 AP5M1Q9H0R1 490 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 CCPG1Q9ULG6 757 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 PCDHB15Q9Y5E8 787 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 TTC28Q96AY4 2481 aa9.16□□□□□ -0.94
VPS50-203ENST00000436177 CABYRO75952 493 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 ASGR1P07306 291 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 TNFAIP2Q03169 654 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 CTDSPL2Q05D32 466 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 RRP12Q5JTH9 1297 aaKnown RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 RCSD1Q6JBY9 416 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 NSMFQ6X4W1 530 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 CCDC129Q6ZRS4 1044 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS50-203ENST00000436177 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS50-203ENST00000436177 TMEM199Q8N511 208 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 MAFAQ8NHW3 353 aaPredicted RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 DCAF4Q8WV16 495 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 AGBL1Q96MI9 1066 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 GUCD1Q96NT3 240 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 MPHOSPH6Q99547 160 aaKnown RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 MTIF3Q9H2K0 278 aaKnown RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 A1CFQ9NQ94 594 aaKnown RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 ADD3Q9UEY8 706 aaKnown RBP9.15□□□□□ -0.94
VPS50-203ENST00000436177 PNMA2Q9UL42 364 aa9.15□□□□□ -0.94
VPS50-203ENST00000436177 LAMA2P24043 3122 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms