RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DLK2Q6UY11 383 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 ANKRD13CQ8N6S4 541 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 CERKQ8TCT0 537 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 TNFRSF25Q93038 417 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 TRIM47Q96LD4 638 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 ZNF277Q9NRM2 450 aaPredicted RBP9.43□□□□□ -0.9
CD44-208ENST00000428726 COL24A1Q17RW2 1714 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 ORC4O43929 436 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PPP1R11O60927 126 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 LDHCP07864 332 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ECE1P42892 770 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PDE4DQ08499 809 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PLS1Q14651 629 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 NAALADL2Q58DX5 795 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 VSTM4Q8IW00 320 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 IQUBQ8NA54 791 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 TRIM34Q9BYJ4 488 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 TMX4Q9H1E5 349 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 MMRN2Q9H8L6 949 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PARP3Q9Y6F1 533 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 B4DLN1 442 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 DDAH1O94760 285 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 RPN1P04843 607 aaKnown RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 SRGNP10124 158 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PDHBP11177 359 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ATP2C1P98194 919 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 CYP27A1Q02318 531 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 KRT31Q15323 416 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 CCDC174Q6PII3 467 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 RAD9BQ6WBX8 426 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ADGRF4Q8IZF3 695 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 TC2NQ8N9U0 490 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ZNF579Q8NAF0 562 aaKnown RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 KIF18AQ8NI77 898 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 RRP36Q96EU6 259 aaKnown RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 OSBPL5Q9H0X9 879 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 MYH6P13533 1939 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 DDX39AO00148 427 aaKnown RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 ZBTB39O15060 712 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ATP2B4P23634 1241 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ECM1Q16610 540 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 CABP7Q86V35 215 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PPFIBP1Q86W92 1011 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ANKRD7Q92527 254 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 PRMT6Q96LA8 375 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 FGFBP2Q9BYJ0 223 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 HOMER2Q9NSB8 354 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 SERPINB13Q9UIV8 391 aa9.42□□□□□ -0.9
CD44-208ENST00000428726 ATF5Q9Y2D1 282 aaPredicted RBP9.42□□□□□ -0.9
CD44-208ENST00000428726 EEF2P13639 858 aaKnown RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 GYS2P54840 703 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 SPECC1LQ69YQ0 1117 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 CCDC12Q8WUD4 166 aaPredicted RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 ELMO3Q96BJ8 720 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 TANGO6Q9C0B7 1094 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 PPP2R2CQ9Y2T4 447 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 MORC2Q9Y6X9 1032 aaPredicted RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 BTAF1O14981 1849 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 GPR75-ASB3A0A0A6YYF3 556 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 VGLL3A8MV65 326 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 E9PMD0 336 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 MYO1BO43795 1136 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 SRGAP2O75044 1071 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 ZBTB7AO95365 584 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 CRKP46108 304 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 GSTO1P78417 241 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 RRP1BQ14684 758 aaKnown RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 GRM4Q14833 912 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 REXO1Q8N1G1 1221 aaKnown RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 CAPZA3Q96KX2 299 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 GLIS2Q9BZE0 524 aaPredicted RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 DNAJC18Q9H819 358 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 ZCCHC17Q9NP64 241 aaKnown RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 FAM207AQ9NSI2 230 aaPredicted RBP9.41□□□□□ -0.9
CD44-208ENST00000428726 AGPAT5Q9NUQ2 364 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 BARHL2Q9NY43 387 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 GUCA1BQ9UMX6 200 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 DUSP10Q9Y6W6 482 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 IRS2Q9Y4H2 1338 aa9.41□□□□□ -0.9
CD44-208ENST00000428726 DLEC1Q9Y238 1755 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 ZMYND10O75800 440 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 GH2P01242 217 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 SLC1A4P43007 532 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 SBK1Q52WX2 424 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 APOBEC3HQ6NTF7 200 aaKnown RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 KANK3Q6NY19 840 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 KRT26Q7Z3Y9 468 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 KSR1Q8IVT5 923 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 SMCR8Q8TEV9 937 aaPredicted RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 CCDC34Q96HJ3 373 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 CDK5RAP3Q96JB5 506 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 MTMR4Q9NYA4 1195 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 HDAC6Q9UBN7 1215 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 ZBTB21Q9ULJ3 1066 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 TNRC6CQ9HCJ0 1690 aaKnown RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 PALM3A6NDB9 673 aaPredicted RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 CTIFO43310 598 aaKnown RBP9.4□□□□□ -0.9
CD44-208ENST00000428726 PPIP5K2O43314 1243 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 PEX10O60683 326 aa9.4□□□□□ -0.9
CD44-208ENST00000428726 BBOX1O75936 387 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms