RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CACNA2D4Q7Z3S7 1137 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 POTEDQ86YR6 584 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 UHMK1Q8TAS1 419 aaKnown RBP9.66□□□□□ -0.86
USP40-203ENST00000427112 GSDMAQ96QA5 445 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 PIGSQ96S52 555 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 IKZF4Q9H2S9 585 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 FAM53CQ9NYF3 392 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 L1RE1Q9UN81 338 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 PSMA7O14818 248 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 ACTN2P35609 894 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 CACNB3P54284 484 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 NBPF9Q3BBW0 867 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 CDKAL1Q5VV42 579 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 PDXDC2PQ6P474 469 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 CABP7Q86V35 215 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 PLCD4Q9BRC7 762 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 RASSF4Q9H2L5 321 aa9.66□□□□□ -0.86
USP40-203ENST00000427112 OVOS2A0A0G2JMS6 1433 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 HIBADHP31937 336 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 EIF4A3P38919 411 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 STIM1Q13586 685 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 NFIXQ14938 502 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 SLC35G1Q2M3R5 365 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 INTS5Q6P9B9 1019 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 CNPY4Q8N129 248 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 TMTC2Q8N394 836 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 CTAGE1Q96RT6 745 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 CRNKL1Q9BZJ0 848 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 BMP2KQ9NSY1 1161 aaPredicted RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 CHORDC1Q9UHD1 332 aaPredicted RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 KLRF2D3W0D1 207 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 RBAK-RBAKDNI3L0D1 243 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 MEIS1O00470 390 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 PRPF3O43395 683 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 CYTH3O43739 400 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 GTPBP6O43824 516 aaPredicted RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 TDP2O95551 362 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 KRT14P02533 472 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 FUT2Q10981 343 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 PDCLQ13371 301 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 PLS1Q14651 629 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 SPA17Q15506 151 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 SHROOM1Q2M3G4 852 aaPredicted RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 NAALADL2Q58DX5 795 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 ZNF34Q8IZ26 560 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 IL17RBQ9NRM6 502 aa9.65□□□□□ -0.86
USP40-203ENST00000427112 TTF2Q9UNY4 1162 aaKnown RBP9.65□□□□□ -0.86
USP40-203ENST00000427112 TNS3Q68CZ2 1445 aa9.65□□□□□ -0.87
USP40-203ENST00000427112 CHD2O14647 1828 aaKnown RBP9.65□□□□□ -0.87
USP40-203ENST00000427112 SMCO2A6NFE2 343 aa9.65□□□□□ -0.87
USP40-203ENST00000427112 ATP2C1P98194 919 aaPredicted RBP9.65□□□□□ -0.87
USP40-203ENST00000427112 TCERG1LQ5VWI1 586 aa9.65□□□□□ -0.87
USP40-203ENST00000427112 OR2W6PQ8NHA6 318 aa9.65□□□□□ -0.87
USP40-203ENST00000427112 IFIH1Q9BYX4 1025 aaKnown RBP9.65□□□□□ -0.87
USP40-203ENST00000427112 DISC1Q9NRI5 854 aa9.65□□□□□ -0.87
USP40-203ENST00000427112 H0YHG0 523 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 KIF5AQ12840 1032 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 TRIM28Q13263 835 aaKnown RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 HLTFQ14527 1009 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP40-203ENST00000427112 ZNF658Q5TYW1 1059 aaPredicted RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 LRRC31Q6UY01 552 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 AMIGO3Q86WK7 504 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 ELMO3Q96BJ8 720 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 MST1RQ04912 1400 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 MRC1P22897 1456 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 RTL9Q8NET4 1388 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 ZNF263O14978 683 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 GNPATO15228 680 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 DDX42Q86XP3 938 aaKnown RBP eCLIP9.64□□□□□ -0.87
USP40-203ENST00000427112 TBCKQ8TEA7 893 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 AFAP1L1Q8TED9 768 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 FERMT2Q96AC1 680 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 NSUN4Q96CB9 384 aaKnown RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 SELENOOQ9BVL4 669 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 TCP11L1Q9NUJ3 509 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 SALL4Q9UJQ4 1053 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 SFI1A8K8P3 1242 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 GNAT2P19087 354 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 CALRP27797 417 aaKnown RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 NOP2P46087 812 aaKnown RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 SCNN1DP51172 638 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 RAPGEF1Q13905 1077 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 BRD3Q15059 726 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 ARL8AQ96BM9 186 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 RUFY1Q96T51 708 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 FGFBP2Q9BYJ0 223 aa9.64□□□□□ -0.87
USP40-203ENST00000427112 SEPT11Q9NVA2 429 aaKnown RBP9.64□□□□□ -0.87
USP40-203ENST00000427112 TRAF5O00463 557 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 KRT18P05783 430 aaKnown RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 BRD2P25440 801 aaKnown RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 COPB2P35606 906 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 SETQ01105 290 aaPredicted RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 EHHADHQ08426 723 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 IKQ13123 557 aaPredicted RBP9.63□□□□□ -0.87
USP40-203ENST00000427112 CCDC40Q4G0X9 1142 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 FBXW10Q5XX13 1052 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 FCHSD1Q86WN1 690 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PACSIN1Q9BY11 444 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PCDHA6Q9UN73 950 aa9.63□□□□□ -0.87
USP40-203ENST00000427112 PCDHA8Q9Y5H6 950 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms