RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RAD51AP2Q09MP3 1159 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 FARP1Q9Y4F1 1045 aaPredicted RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 AOX1Q06278 1338 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 INSRP06213 1382 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PAMP19021 973 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SAT1P21673 171 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 EIF4A2Q14240 407 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 TMC4Q7Z404 712 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 MRPL50Q8N5N7 158 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 RABEP2Q9H5N1 569 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 KLHL14Q9P2G3 628 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 LARSQ9P2J5 1176 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 BZW2Q9Y6E2 419 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 NCKAP5LQ9HCH0 1330 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF18P17022 549 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PTK2Q05397 1052 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SURF1Q15526 300 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 MUM1Q2TAK8 710 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SYT10Q6XYQ8 523 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PBRM1Q86U86 1689 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 THEM5Q8N1Q8 247 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 PDCD7Q8N8D1 485 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM58Q8NG06 486 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 EFHD1Q9BUP0 239 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 HPCAL4Q9UM19 191 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 BZW1Q7L1Q6 419 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 ARMCX2Q7L311 632 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 MYOCDQ8IZQ8 938 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 GBP5Q96PP8 586 aa7.48□□□□□ -1.21
SCN1A-204ENST00000423058 LSM14BQ9BX40 385 aaKnown RBP7.48□□□□□ -1.21
SCN1A-204ENST00000423058 SYCP2Q9BX26 1530 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 NNMTP40261 264 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 IGBP1P78318 339 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 TNNI3KQ59H18 835 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 DHX38Q92620 1227 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 CCDC138Q96M89 665 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 FPGT-TNNI3KV9GXZ4 949 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 INHBAP08476 426 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 BFSP1Q12934 665 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ZBTB17Q13105 803 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ARMCX5Q6P1M9 558 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MAPKAPK5Q8IW41 473 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 PPP2R3CQ969Q6 453 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 NUP160Q12769 1436 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 GPC4O75487 556 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 HOXB7P09629 217 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 EPHB1P54762 984 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 GTF2IP78347 998 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 THOC5Q13769 683 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 RSBN1LQ6PCB5 846 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 DYMQ7RTS9 669 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 RNF217Q8TC41 542 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 CCHCR1Q8TD31 782 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 TNNQ9UQP3 1299 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 PCDHB4Q9Y5E5 795 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ATP10DQ9P241 1426 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 CHEK2O96017 543 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 DLATP10515 647 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 INPP5BP32019 993 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MAGEA1P43355 309 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 WASHC5Q12768 1159 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 CWF19L2Q2TBE0 894 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 TTBK2Q6IQ55 1244 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF713Q8N859 430 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 URGCPQ8TCY9 931 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 SLITRK6Q9H5Y7 841 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 H7C0C1 242 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ATF2P15336 505 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ATP5OP48047 213 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ARHGDIAP52565 204 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 ABCB5Q2M3G0 1257 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 SLC7A3Q8WY07 619 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 FGD4Q96M96 766 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MRPL46Q9H2W6 279 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 OPHN1O60890 802 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 FOSP01100 380 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 CA4P22748 312 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 DRP2Q13474 957 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 PTK2BQ14289 1009 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 GCKRQ14397 625 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MAGEF1Q9HAY2 307 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MAPK8IP1Q9UQF2 711 aa7.47□□□□□ -1.21
SCN1A-204ENST00000423058 FNDC3AQ9Y2H6 1198 aaKnown RBP7.47□□□□□ -1.21
SCN1A-204ENST00000423058 MCF2LO15068 1137 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 ZNF202O95125 648 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 KHDRBS2Q5VWX1 349 aaKnown RBP7.46□□□□□ -1.21
SCN1A-204ENST00000423058 CCDC51Q96ER9 411 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 TRIM15Q9C019 465 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 PCDHA1Q9Y5I3 950 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 MAD1L1Q9Y6D9 718 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 PHLPP2Q6ZVD8 1323 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 CTSWP56202 376 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 NLRP12P59046 1061 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 TFAP4Q01664 338 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 RAB42Q8N4Z0 105 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 GIMAP8Q8ND71 665 aaPredicted RBP7.46□□□□□ -1.21
SCN1A-204ENST00000423058 TSC1Q92574 1164 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 LRRC4Q9HBW1 653 aa7.46□□□□□ -1.21
SCN1A-204ENST00000423058 SCHIP1Q9P0W5 487 aaPredicted RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms