RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 ROBO3Q96MS0 1386 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 MINDY4BA8MYZ0 360 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 ITGB8P26012 769 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 BACE1P56817 501 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 PPP2R5BQ15173 497 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 NTRK3Q16288 839 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 TRIM60Q495X7 471 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 RRP12Q5JTH9 1297 aaKnown RBP19.72■□□□□ 0.75
PTPRC-206ENST00000413409 CTR9Q6PD62 1173 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 ATXN2LQ8WWM7 1075 aaKnown RBP19.72■□□□□ 0.75
PTPRC-206ENST00000413409 ANP32BQ92688 251 aaKnown RBP19.72■□□□□ 0.75
PTPRC-206ENST00000413409 ASB2Q96Q27 587 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 DCP1AQ9NPI6 582 aaPredicted RBP19.72■□□□□ 0.75
PTPRC-206ENST00000413409 INCENPQ9NQS7 918 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 TOMM22Q9NS69 142 aa19.72■□□□□ 0.75
PTPRC-206ENST00000413409 ATAD5Q96QE3 1844 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 CCDC196A0A1B0GTZ2 297 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 GOLGA6L4A6NEF3 574 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 LDHCP07864 332 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 SLC3A2P08195 630 aaKnown RBP19.71■□□□□ 0.75
PTPRC-206ENST00000413409 IFNAR1P17181 557 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 CNGA1P29973 690 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 CDC27P30260 824 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 FOSBP53539 338 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 PPP4CP60510 307 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 SEC23AQ15436 765 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 MFSD14CQ5VZR4 134 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 RAB11FIP4Q86YS3 637 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 WASF1Q92558 559 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 PAGR1Q9BTK6 254 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 WDR18Q9BV38 432 aa19.71■□□□□ 0.75
PTPRC-206ENST00000413409 FAM217BQ9NTX9 383 aaPredicted RBP19.71■□□□□ 0.75
PTPRC-206ENST00000413409 AATFQ9NY61 560 aaKnown RBP eCLIP19.71■□□□□ 0.75
PTPRC-206ENST00000413409 SNX17Q15036 470 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 RTN1Q16799 776 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 PPM1EQ8WY54 764 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 RNPC3Q96LT9 517 aaKnown RBP19.7■□□□□ 0.74
PTPRC-206ENST00000413409 PPP1R9BQ96SB3 815 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 TFIP11Q9UBB9 837 aaKnown RBP19.7■□□□□ 0.74
PTPRC-206ENST00000413409 MROH7-TTC4A0A0A0MT08 1334 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 TNKSO95271 1327 aa19.7■□□□□ 0.74
PTPRC-206ENST00000413409 IGHA2P01877 340 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 DNAJB2P25686 324 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 CYP2C19P33261 490 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 SHROOM1Q2M3G4 852 aaPredicted RBP19.69■□□□□ 0.74
PTPRC-206ENST00000413409 CCAR1Q8IX12 1150 aaKnown RBP19.69■□□□□ 0.74
PTPRC-206ENST00000413409 ZNF654Q8IZM8 581 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 UHRF1Q96T88 793 aaPredicted RBP19.69■□□□□ 0.74
PTPRC-206ENST00000413409 ALG1Q9BT22 464 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 AS3MTQ9HBK9 375 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 RTEL1Q9NZ71 1219 aa19.69■□□□□ 0.74
PTPRC-206ENST00000413409 GPR75-ASB3A0A0A6YYF3 556 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 RANBP6O60518 1105 aaKnown RBP19.68■□□□□ 0.74
PTPRC-206ENST00000413409 MSCO60682 206 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 NPM3O75607 178 aaKnown RBP19.68■□□□□ 0.74
PTPRC-206ENST00000413409 CNMDO75829 334 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 YEATS4O95619 227 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 BAG3O95817 575 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 GUCY1B3Q02153 619 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 IQCA1Q86XH1 822 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 PGBD1Q96JS3 809 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 USP28Q96RU2 1077 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 NOL10Q9BSC4 688 aaKnown RBP19.68■□□□□ 0.74
PTPRC-206ENST00000413409 FUCA2Q9BTY2 467 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 NUP62CLQ9H1M0 184 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 ZNF576Q9H609 170 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 TMOD4Q9NZQ9 345 aa19.68■□□□□ 0.74
PTPRC-206ENST00000413409 USP17L12C9JPN9 530 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 USP17L21D6R901 530 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 LIG1P18858 919 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 SSRP1Q08945 709 aaKnown RBP19.67■□□□□ 0.74
PTPRC-206ENST00000413409 NPLOC4Q8TAT6 608 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 ZSCAN10Q96SZ4 725 aaPredicted RBP19.67■□□□□ 0.74
PTPRC-206ENST00000413409 POLR3EQ9NVU0 708 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 SYNGAP1Q96PV0 1343 aa19.67■□□□□ 0.74
PTPRC-206ENST00000413409 PIEZO1Q92508 2521 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 CDK5RAP2Q96SN8 1893 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 DDAH1O94760 285 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 CALM1P0DP23 149 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 CALM2P0DP24 149 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 CALM3P0DP25 149 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 RXRAP19793 462 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 UVSSAQ2YD98 709 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 MYSM1Q5VVJ2 828 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 ANO1Q5XXA6 986 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 RBM43Q6ZSC3 357 aaKnown RBP19.66■□□□□ 0.74
PTPRC-206ENST00000413409 SLF2Q8IX21 1173 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 TRIM22Q8IYM9 498 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 ENAHQ8N8S7 591 aaPredicted RBP19.66■□□□□ 0.74
PTPRC-206ENST00000413409 BICD2Q8TD16 824 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 MYL10Q9BUA6 226 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 CLSTN2Q9H4D0 955 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 THEGQ9P2T0 379 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 XIRP2A4UGR9 3374 aa19.66■□□□□ 0.74
PTPRC-206ENST00000413409 REV3LO60673 3130 aa19.65■□□□□ 0.74
PTPRC-206ENST00000413409 FOCADQ5VW36 1801 aa19.65■□□□□ 0.74
PTPRC-206ENST00000413409 CYP2D7A0A087X1C5 515 aa19.65■□□□□ 0.74
PTPRC-206ENST00000413409 HOXC6P09630 235 aa19.65■□□□□ 0.74
PTPRC-206ENST00000413409 CYBAP13498 195 aa19.65■□□□□ 0.74
PTPRC-206ENST00000413409 PLCG2P16885 1265 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms