RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 NCOA1Q15788 1441 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 FLT4P35916 1363 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 CASQ2O14958 399 aaPredicted RBP9.21□□□□□ -0.93
SCN9A-203ENST00000409672 MYL1P05976 194 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 VCPP55072 806 aaKnown RBP9.21□□□□□ -0.93
SCN9A-203ENST00000409672 RNF139Q8WU17 664 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 ZMYM3Q14202 1370 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 MROH5Q6ZUA9 1318 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 KCNQ3O43525 872 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 SESN3P58005 492 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 ANO1Q5XXA6 986 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 LCA5Q86VQ0 697 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 DNAAF3Q8N9W5 541 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 RAET1EQ8TD07 263 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 SLF1Q9BQI6 1058 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 TMEM106CQ9BVX2 250 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 HPS4Q9NQG7 708 aa9.21□□□□□ -0.93
SCN9A-203ENST00000409672 G3BP2Q9UN86 482 aaKnown RBP9.21□□□□□ -0.93
SCN9A-203ENST00000409672 HOXA13P31271 388 aaPredicted RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 BLVRAP53004 296 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 CHRNDQ07001 517 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 RASGRP4Q8TDF6 673 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 LRCH2Q5VUJ6 765 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 CXorf38Q8TB03 319 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 ASXL2Q76L83 1435 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 POC1B-GALNT4F8VUJ3 575 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 OCM2P0CE71 109 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 OCMP0CE72 109 aaPredicted RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 NUMBP49757 651 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 SRP68Q9UHB9 627 aaKnown RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 IREB2P48200 963 aaKnown RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 PTPN21Q16825 1174 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 PKNOX2Q96KN3 472 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 TRPC7Q9HCX4 862 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 SARS2Q9NP81 518 aaKnown RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 NRBP2Q9NSY0 501 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 AFF4Q9UHB7 1163 aaKnown RBP9.21□□□□□ -0.94
SCN9A-203ENST00000409672 BAG5Q9UL15 447 aa9.21□□□□□ -0.94
SCN9A-203ENST00000409672 KLRF2D3W0D1 207 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 HNRNPDLO14979 420 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 KRT3P12035 628 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CRKLP46109 303 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 BFSP1Q12934 665 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TTC31Q49AM3 519 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 VWA3BQ502W6 1294 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 MIS18BP1Q6P0N0 1132 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 BRAPQ7Z569 592 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CNGA4Q8IV77 575 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 HSPH1Q92598 858 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CNKSR1Q969H4 720 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 RAB3IPQ96QF0 476 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TACO1Q9BSH4 297 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ZNF341Q9BYN7 854 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 COG4Q9H9E3 785 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 IPO11Q9UI26 975 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 XRCC5P13010 732 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ATP2B4P23634 1241 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ADKP55263 362 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 DYNLL1P63167 89 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 NOLC1Q14978 699 aaKnown RBP eCLIP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 RPGRIP1Q96KN7 1286 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CLCA2Q9UQC9 943 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TRPM2O94759 1503 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 KCNK3O14649 394 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 SERPINB2P05120 415 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 EN1Q05925 392 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 MTX1Q13505 466 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TBCCQ15814 346 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 PPP2R5EQ16537 467 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 HADHQ16836 314 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 FAM180AQ6UWF9 173 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CYP26C1Q6V0L0 522 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 FAM76AQ8TAV0 307 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 SLC12A6Q9UHW9 1150 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ESRRBO95718 433 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ACTN1P12814 892 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CCND2P30279 289 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 MCF2L2Q86YR7 1114 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 HAUS1Q96CS2 278 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 GTF2A1P52655 376 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TBC1D22AQ8WUA7 517 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 YWHAEP62258 255 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 DDX53Q86TM3 631 aaKnown RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 DPH5Q9H2P9 285 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 PNMA2Q9UL42 364 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 SLC4A7Q9Y6M7 1214 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 POSTNQ15063 836 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 AOC3Q16853 763 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 RINT1Q6NUQ1 792 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 YAF2Q8IY57 180 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 CFAP36Q96G28 342 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 PRR23AA6NEV1 266 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 TAOK1Q7L7X3 1001 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 KRT25Q7Z3Z0 450 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 C10orf67Q8IYJ2 551 aa9.2□□□□□ -0.94
SCN9A-203ENST00000409672 NR1H4Q96RI1 486 aaPredicted RBP9.2□□□□□ -0.94
SCN9A-203ENST00000409672 ANKRD36BQ8N2N9 1353 aa9.19□□□□□ -0.94
SCN9A-203ENST00000409672 VSIG1Q86XK7 387 aa9.19□□□□□ -0.94
SCN9A-203ENST00000409672 CCDC94Q9BW85 323 aaPredicted RBP9.19□□□□□ -0.94
SCN9A-203ENST00000409672 GREM2Q9H772 168 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms