RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 ZBTB43O43298 467 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 CAPN15O75808 1086 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 CCL5P13501 91 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 TRIM32Q13049 653 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 MAP3K21Q5TCX8 1036 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 IFFO2Q5TF58 517 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 RAB11FIP4Q86YS3 637 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 CCDC144CPQ8IYA2 1237 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 BRF1Q92994 677 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 IL17RAQ96F46 866 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 MAML3Q96JK9 1138 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 SPZ1Q9BXG8 430 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 BRCA2P51587 3418 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 PRKAR2AP13861 404 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 USH1GQ495M9 461 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 FBXO11Q86XK2 927 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 CLEC4DQ8WXI8 215 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 AMNQ9BXJ7 453 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 UPF3BQ9BZI7 483 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 RNF208Q9H0X6 261 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 UNC93B1Q9H1C4 597 aa23.05■■□□□ 1.28
PDLIM2-207ENST00000409417 SMCHD1A6NHR9 2005 aa23.04■■□□□ 1.28
PDLIM2-207ENST00000409417 NFIBO00712 420 aa23.04■■□□□ 1.28
PDLIM2-207ENST00000409417 CACNB2Q08289 660 aaPredicted RBP23.04■■□□□ 1.28
PDLIM2-207ENST00000409417 PIGSQ96S52 555 aa23.04■■□□□ 1.28
PDLIM2-207ENST00000409417 CYP39A1Q9NYL5 469 aa23.04■■□□□ 1.28
PDLIM2-207ENST00000409417 ABCB11O95342 1321 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 RPTORQ8N122 1335 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 BAZ2BQ9UIF8 2168 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 PNMA6FA0A0J9YX94 578 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 POTEB2H3BUK9 544 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 PLEKHA8P1O95397 391 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 CYP2C19P33261 490 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 APOBRQ0VD83 1088 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 NSMFQ6X4W1 530 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 HOMER1Q86YM7 354 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 SRBD1Q8N5C6 995 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 FAM133AQ8N9E0 248 aa23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 HMX1Q9NP08 348 aaPredicted RBP23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 RBM28Q9NW13 759 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 ZNFX1Q9P2E3 1918 aaKnown RBP23.03■■□□□ 1.28
PDLIM2-207ENST00000409417 PPP1R11O60927 126 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 SOX10P56693 466 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 EVCP57679 992 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 TRAF1Q13077 416 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 PPP2R5BQ15173 497 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 RTN1Q16799 776 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 TMTC3Q6ZXV5 915 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 ZNF467Q7Z7K2 595 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 MSL3Q8N5Y2 521 aaKnown RBP23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 RGS22Q8NE09 1264 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 MAF1Q9H063 256 aa23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 PAK6Q9NQU5 681 aaPredicted RBP23.02■■□□□ 1.28
PDLIM2-207ENST00000409417 GJB1P08034 283 aa23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 CNTN2Q02246 1040 aa23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 RRP36Q96EU6 259 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 TINF2Q9BSI4 451 aa23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 PDRG1Q9NUG6 133 aa23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 NAP1L2Q9ULW6 460 aaPredicted RBP23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 MRPL11Q9Y3B7 192 aaKnown RBP23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 PCDHA1Q9Y5I3 950 aa23.01■■□□□ 1.27
PDLIM2-207ENST00000409417 GOLGA8AA7E2F4 631 aa23■■□□□ 1.27
PDLIM2-207ENST00000409417 GOLGA8BA8MQT2 603 aa23■■□□□ 1.27
PDLIM2-207ENST00000409417 BAATQ14032 418 aaPredicted RBP23■■□□□ 1.27
PDLIM2-207ENST00000409417 TOB2Q14106 344 aaPredicted RBP23■■□□□ 1.27
PDLIM2-207ENST00000409417 MAMDC4Q6UXC1 1216 aa23■■□□□ 1.27
PDLIM2-207ENST00000409417 CMTR1Q8N1G2 835 aaKnown RBP23■■□□□ 1.27
PDLIM2-207ENST00000409417 FGD4Q96M96 766 aa23■■□□□ 1.27
PDLIM2-207ENST00000409417 XRN2Q9H0D6 950 aaKnown RBP eCLIP23■■□□□ 1.27
PDLIM2-207ENST00000409417 CCDC196A0A1B0GTZ2 297 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 PTPDC1A2A3K4 754 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 POTEFA5A3E0 1075 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 METAP2P50579 478 aaKnown RBP eCLIP22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 RNF207Q6ZRF8 634 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 MCF2L2Q86YR7 1114 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 FAM217BQ9NTX9 383 aaPredicted RBP22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 SEC63Q9UGP8 760 aaKnown RBP22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 NRBP1Q9UHY1 535 aa22.99■■□□□ 1.27
PDLIM2-207ENST00000409417 RPS6P62753 249 aaKnown RBP22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 CCDC82Q8N4S0 544 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 PIBF1Q8WXW3 757 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 SYNGAP1Q96PV0 1343 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 CYBAP13498 195 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 FUT2Q10981 343 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 SLC30A10Q6XR72 485 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 U2AF1L4Q8WU68 220 aaKnown RBP22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 DEFB118Q96PH6 123 aa22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 ALDH8A1Q9H2A2 487 aaPredicted RBP22.98■■□□□ 1.27
PDLIM2-207ENST00000409417 NID2Q14112 1375 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 SOWAHBA6NEL2 793 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 PDIA3P30101 505 aaKnown RBP22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 CDC27P30260 824 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 CCND3P30281 292 aaPredicted RBP22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 GJA8P48165 433 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 TRPV1Q8NER1 839 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 CNPY2Q9Y2B0 182 aa22.97■■□□□ 1.27
PDLIM2-207ENST00000409417 ASB14A6NK59 587 aa22.96■■□□□ 1.27
PDLIM2-207ENST00000409417 SGPL1O95470 568 aa22.96■■□□□ 1.27
PDLIM2-207ENST00000409417 CALML3P27482 149 aa22.96■■□□□ 1.27
PDLIM2-207ENST00000409417 ADD3Q9UEY8 706 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms