RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 TKFCQ3LXA3 575 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 SNRNP48Q6IEG0 339 aaKnown RBP23.59■■□□□ 1.37
VSX1-203ENST00000409285 TYW1BQ6NUM6 668 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 RIOX2Q8IUF8 465 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 AGBL1Q96MI9 1066 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 BEGAINQ9BUH8 593 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 ZFYVE28Q9HCC9 887 aa23.59■■□□□ 1.37
VSX1-203ENST00000409285 RAVER2Q9HCJ3 691 aaKnown RBP23.59■■□□□ 1.37
VSX1-203ENST00000409285 DOCK3Q8IZD9 2030 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 BCRP11274 1271 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 CRHR2Q13324 411 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.58■■□□□ 1.37
VSX1-203ENST00000409285 CPXCR1Q8N123 301 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 FBXO18Q8NFZ0 1043 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 SHISA4Q96DD7 197 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 C8orf76Q96K31 380 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 ZMYND12Q9H0C1 365 aa23.58■■□□□ 1.37
VSX1-203ENST00000409285 HSPA1AP0DMV8 641 aaKnown RBP23.57■■□□□ 1.36
VSX1-203ENST00000409285 HSPA1BP0DMV9 641 aaKnown RBP23.57■■□□□ 1.36
VSX1-203ENST00000409285 DDIT3P35638 169 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 NAPAP54920 295 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 GHRHRQ02643 423 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 USH1GQ495M9 461 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 GALNT17Q6IS24 598 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 SHCBP1Q8NEM2 672 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 GPRC5AQ8NFJ5 357 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 COA7Q96BR5 231 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 PAGR1Q9BTK6 254 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 PHF20Q9BVI0 1012 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 VPS54Q9P1Q0 977 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 MRPL11Q9Y3B7 192 aaKnown RBP23.57■■□□□ 1.36
VSX1-203ENST00000409285 MYH7BA7E2Y1 1941 aa23.57■■□□□ 1.36
VSX1-203ENST00000409285 SLC25A27O95847 323 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 TRIM29Q14134 588 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 LARP1BQ659C4 914 aaKnown RBP23.56■■□□□ 1.36
VSX1-203ENST00000409285 C17orf99Q6UX52 265 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 SPRYD3Q8NCJ5 442 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 GLT8D2Q9H1C3 349 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 CALML3P27482 149 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 CCNA1P78396 465 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 SAMD3Q8N6K7 520 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 ANKRD13CQ8N6S4 541 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 DAGLBQ8NCG7 672 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 CHST13Q8NET6 341 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 MOV10L1Q9BXT6 1211 aaKnown RBP23.56■■□□□ 1.36
VSX1-203ENST00000409285 SAGE1Q9NXZ1 904 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 RIPK3Q9Y572 518 aa23.56■■□□□ 1.36
VSX1-203ENST00000409285 OPLAHO14841 1288 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 MMP1P03956 469 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 SYT1P21579 422 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 PLS1Q14651 629 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 KRT40Q6A162 431 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 FBXO40Q9UH90 709 aa23.55■■□□□ 1.36
VSX1-203ENST00000409285 CASP8AP2Q9UKL3 1982 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 ALAS1P13196 640 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 GNA11P29992 359 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 NPY5RQ15761 445 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 Q3C1V9 767 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 CLEC4DQ8WXI8 215 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 TRERF1Q96PN7 1200 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 MROH8Q9H579 483 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 RIC8AQ9NPQ8 531 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 RNF146Q9NTX7 359 aa23.54■■□□□ 1.36
VSX1-203ENST00000409285 PIK3CDO00329 1044 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 BICD2Q8TD16 824 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 CUL5Q93034 780 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 ACAD9Q9H845 621 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 C6orf50Q9HD87 102 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 GJB4Q9NTQ9 266 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 RNF186Q9NXI6 227 aa23.53■■□□□ 1.36
VSX1-203ENST00000409285 MAP3K20Q9NYL2 800 aaKnown RBP23.53■■□□□ 1.36
VSX1-203ENST00000409285 ZSWIM8A7E2V4 1837 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 SMCO2A6NFE2 343 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 STX6O43752 255 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 PEX10O60683 326 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 MCF2L2Q86YR7 1114 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 CPA4Q9UI42 421 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 PCDHA4Q9UN74 947 aa23.52■■□□□ 1.36
VSX1-203ENST00000409285 LRRC37A2A6NM11 1700 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 TAL1P17542 331 aaPredicted RBP23.51■■□□□ 1.35
VSX1-203ENST00000409285 ERCC3P19447 782 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 ADCY7P51828 1080 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 MRPL12P52815 198 aaKnown RBP23.51■■□□□ 1.35
VSX1-203ENST00000409285 NLRP5P59047 1200 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 MUM1L1Q5H9M0 696 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 PSTPIP2Q9H939 334 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 KCNJ14Q9UNX9 436 aa23.51■■□□□ 1.35
VSX1-203ENST00000409285 H3BQV1 296 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 M0R2N6 131 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 NFIBO00712 420 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 HSD17B4P51659 736 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 NOM1Q5C9Z4 860 aaKnown RBP23.5■■□□□ 1.35
VSX1-203ENST00000409285 IFFO2Q5TF58 517 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 BRMS1Q9HCU9 246 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 HOMER2Q9NSB8 354 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 CIZ1Q9ULV3 898 aaPredicted RBP23.5■■□□□ 1.35
VSX1-203ENST00000409285 PFASO15067 1338 aa23.5■■□□□ 1.35
VSX1-203ENST00000409285 FOXN1O15353 648 aa23.49■■□□□ 1.35
VSX1-203ENST00000409285 CLK2P49760 499 aaKnown RBP23.49■■□□□ 1.35
VSX1-203ENST00000409285 SAFBQ15424 915 aaKnown RBP eCLIP23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms