RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 PTPDC1A2A3K4 754 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 NCAPG2Q86XI2 1143 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 SMARCC2Q8TAQ2 1214 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 CLEC4DQ8WXI8 215 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 TRERF1Q96PN7 1200 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 ZSWIM8A7E2V4 1837 aa18.43■□□□□ 0.54
HMGA1-204ENST00000401473 OPLAHO14841 1288 aa18.42■□□□□ 0.54
HMGA1-204ENST00000401473 CDKL5O76039 1030 aa18.42■□□□□ 0.54
HMGA1-204ENST00000401473 WWC2Q6AWC2 1192 aa18.42■□□□□ 0.54
HMGA1-204ENST00000401473 TBC1D5Q92609 795 aa18.42■□□□□ 0.54
HMGA1-204ENST00000401473 TRIM47Q96LD4 638 aa18.42■□□□□ 0.54
HMGA1-204ENST00000401473 LLPHQ9BRT6 129 aaKnown RBP18.42■□□□□ 0.54
HMGA1-204ENST00000401473 ORC3Q9UBD5 711 aaPredicted RBP18.42■□□□□ 0.54
HMGA1-204ENST00000401473 NFIBO00712 420 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 SLC25A27O95847 323 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 SCG2P13521 617 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 CCNA1P78396 465 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 TRIM22Q8IYM9 498 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 GJB4Q9NTQ9 266 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 MGAMO43451 1857 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 PSMC4P43686 418 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 AKAP17AQ02040 695 aaKnown RBP18.41■□□□□ 0.54
HMGA1-204ENST00000401473 HEATR3Q7Z4Q2 680 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 HSCBQ8IWL3 235 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 SHCBP1Q8NEM2 672 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 MROH8Q9H579 483 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 RNF146Q9NTX7 359 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 BARHL2Q9NY43 387 aa18.41■□□□□ 0.54
HMGA1-204ENST00000401473 DEXIO95424 95 aa18.4■□□□□ 0.54
HMGA1-204ENST00000401473 WDR78Q5VTH9 848 aa18.4■□□□□ 0.54
HMGA1-204ENST00000401473 GPR142Q7Z601 462 aa18.4■□□□□ 0.54
HMGA1-204ENST00000401473 STXBP3O00186 592 aa18.39■□□□□ 0.54
HMGA1-204ENST00000401473 CHST13Q8NET6 341 aa18.39■□□□□ 0.54
HMGA1-204ENST00000401473 RBM27Q9P2N5 1060 aaKnown RBP18.39■□□□□ 0.54
HMGA1-204ENST00000401473 STK36Q9NRP7 1315 aa18.39■□□□□ 0.54
HMGA1-204ENST00000401473 MAPK4P31152 587 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 TKFCQ3LXA3 575 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 CCAR1Q8IX12 1150 aaKnown RBP18.39■□□□□ 0.53
HMGA1-204ENST00000401473 ERO1AQ96HE7 468 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 ACAD9Q9H845 621 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 PRDM10Q9NQV6 1147 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 VPS54Q9P1Q0 977 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 ABCB11O95342 1321 aa18.39■□□□□ 0.53
HMGA1-204ENST00000401473 ADAMTS3O15072 1205 aa18.38■□□□□ 0.53
HMGA1-204ENST00000401473 A1CFQ9NQ94 594 aaKnown RBP18.38■□□□□ 0.53
HMGA1-204ENST00000401473 FOXD4L1Q9NU39 408 aa18.38■□□□□ 0.53
HMGA1-204ENST00000401473 GJD2Q9UKL4 321 aa18.38■□□□□ 0.53
HMGA1-204ENST00000401473 PNMA2Q9UL42 364 aa18.38■□□□□ 0.53
HMGA1-204ENST00000401473 MRPL11Q9Y3B7 192 aaKnown RBP18.38■□□□□ 0.53
HMGA1-204ENST00000401473 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
HMGA1-204ENST00000401473 PLEKHH3Q7Z736 793 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 TNPO2O14787 897 aaKnown RBP18.37■□□□□ 0.53
HMGA1-204ENST00000401473 STRNO43815 780 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 PTPREP23469 700 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 NAPAP54920 295 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 FCGRTP55899 365 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 KIF22Q14807 665 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 OTOP1Q7RTM1 612 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 INTS4Q96HW7 963 aaKnown RBP18.37■□□□□ 0.53
HMGA1-204ENST00000401473 PURBQ96QR8 312 aaKnown RBP18.37■□□□□ 0.53
HMGA1-204ENST00000401473 ALG1Q9BT22 464 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 FBXO40Q9UH90 709 aa18.37■□□□□ 0.53
HMGA1-204ENST00000401473 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-204ENST00000401473 PLXNB2O15031 1838 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 MEIS2O14770 477 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 FCER1AP12319 257 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 GJB2P29033 226 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 COPB2P35606 906 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 RPS6P62753 249 aaKnown RBP18.36■□□□□ 0.53
HMGA1-204ENST00000401473 HMGN5P82970 282 aaKnown RBP18.36■□□□□ 0.53
HMGA1-204ENST00000401473 TRAF1Q13077 416 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 BAATQ14032 418 aaPredicted RBP18.36■□□□□ 0.53
HMGA1-204ENST00000401473 NSMFQ6X4W1 530 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.36■□□□□ 0.532e-6■■■■□ 19.9
HMGA1-204ENST00000401473 ANKRD35Q8N283 1001 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 CYP39A1Q9NYL5 469 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 TRIM17Q9Y577 477 aa18.36■□□□□ 0.53
HMGA1-204ENST00000401473 SMCO2A6NFE2 343 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 hCG_1984214I3L0E3 225 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 COBLO75128 1261 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 CFBP00751 764 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 PGK2P07205 417 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 ADORA2AP29274 412 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 GRB14Q14449 540 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 MORN1Q5T089 497 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 USP17L6PQ6QN14 398 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 ZNF713Q8N859 430 aaPredicted RBP18.35■□□□□ 0.53
HMGA1-204ENST00000401473 SPRYD3Q8NCJ5 442 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 RGS22Q8NE09 1264 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 MMP19Q99542 508 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 ZMYND12Q9H0C1 365 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 PSTPIP2Q9H939 334 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 GABRQQ9UN88 632 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 KCNJ14Q9UNX9 436 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 DNAJC25-GNG10A0A024R161 153 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 HOXA13P31271 388 aaPredicted RBP18.35■□□□□ 0.53
HMGA1-204ENST00000401473 CNTN2Q02246 1040 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 NPY5RQ15761 445 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 USP6NLQ92738 828 aa18.35■□□□□ 0.53
HMGA1-204ENST00000401473 SH3GLB2Q9NR46 395 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms