RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 IL27Q8NEV9 243 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 PAWRQ96IZ0 340 aaKnown RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 NUP88Q99567 741 aaPredicted RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 AGXT2Q9BYV1 514 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 C22orf23Q9BZE7 217 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 MTMR4Q9NYA4 1195 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 MORF4L1Q9UBU8 362 aa10.8□□□□□ -0.68
VPS53-203ENST00000401468 LAMA2P24043 3122 aaKnown RBP10.8□□□□□ -0.68
VPS53-203ENST00000401468 B4E1Z4 1266 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L15C9J2P7 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L13C9JLJ4 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L11C9JVI0 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L18D6R9N7 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L22D6RA61 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L17D6RBQ6 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L19D6RCP7 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L20D6RJB6 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 KDM4AO75164 1064 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 HMGCRP04035 888 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 TFAP4Q01664 338 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 USP17L24Q0WX57 530 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 TRDNQ13061 729 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 IRF5Q13568 498 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 SEC23AQ15436 765 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 ANO1Q5XXA6 986 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 CATSPERGQ6ZRH7 1159 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 CYB5R4Q7L1T6 521 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 IGDCC4Q8TDY8 1250 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 CEP95Q96GE4 821 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 NEK1Q96PY6 1258 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 ALDH8A1Q9H2A2 487 aaPredicted RBP10.79□□□□□ -0.68
VPS53-203ENST00000401468 KANSL2Q9H9L4 492 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 FBXO28Q9NVF7 368 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 NYAP2Q9P242 653 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 LTBP2Q14767 1821 aa10.79□□□□□ -0.68
VPS53-203ENST00000401468 TSPY2A6NKD2 308 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 TSPY3P0CV98 308 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 TSPY8P0CW00 308 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 EEF2P13639 858 aaKnown RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 SYN1P17600 705 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 PSMA5P28066 241 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 MCM5P33992 734 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 ICA1Q05084 483 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 CACNB2Q08289 660 aaPredicted RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 CCDC178Q5BJE1 867 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 FAM47AQ5JRC9 791 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 DHX32Q7L7V1 743 aaKnown RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 PLEKHH3Q7Z736 793 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 UBE2Q1Q7Z7E8 422 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 RALYLQ86SE5 291 aaKnown RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 DGKHQ86XP1 1220 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 C7orf61Q8IZ16 206 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 NPLOC4Q8TAT6 608 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 PXYLP1Q8TE99 480 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 ATG4CQ96DT6 458 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 TMEM87BQ96K49 555 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 C12orf42Q96LP6 360 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 TTC14Q96N46 770 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 ZSCAN10Q96SZ4 725 aaPredicted RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 NUDT12Q9BQG2 462 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 KIAA1683Q9H0B3 1180 aa10.78□□□□□ -0.68
VPS53-203ENST00000401468 PAK6Q9NQU5 681 aaPredicted RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 ZMYND8Q9ULU4 1186 aaPredicted RBP10.78□□□□□ -0.68
VPS53-203ENST00000401468 RANBP6O60518 1105 aaKnown RBP10.77□□□□□ -0.69
VPS53-203ENST00000401468 NMT2O60551 498 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 FLOT1O75955 427 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 TTLL1O95922 423 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 RPS6KB1P23443 525 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 LIFRP42702 1097 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 EVCP57679 992 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 MORN1Q5T089 497 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 RUFY3Q7L099 469 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 RASGRP2Q7LDG7 609 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 SGMS1Q86VZ5 419 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 IQCA1Q86XH1 822 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 ENAHQ8N8S7 591 aaPredicted RBP10.77□□□□□ -0.69
VPS53-203ENST00000401468 JAKMIP1Q96N16 626 aaKnown RBP10.77□□□□□ -0.69
VPS53-203ENST00000401468 UPF2Q9HAU5 1272 aaKnown RBP10.77□□□□□ -0.69
VPS53-203ENST00000401468 TMX2Q9Y320 296 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 TNKSO95271 1327 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 NID2Q14112 1375 aa10.77□□□□□ -0.69
VPS53-203ENST00000401468 MYH7BA7E2Y1 1941 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 SH2B2O14492 632 aaPredicted RBP10.76□□□□□ -0.69
VPS53-203ENST00000401468 PRC1O43663 620 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 CNGA1P29973 690 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 MAPK4P31152 587 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 CYP2C19P33261 490 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 USP14P54578 494 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 RRP12Q5JTH9 1297 aaKnown RBP10.76□□□□□ -0.69
VPS53-203ENST00000401468 PRAMEF19Q5SWL8 479 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 FAM83BQ5T0W9 1011 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 BLOC1S2Q6QNY1 142 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 GMCL1P1Q8NEA9 526 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 ZNF516Q92618 1163 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 MOV10L1Q9BXT6 1211 aaKnown RBP10.76□□□□□ -0.69
VPS53-203ENST00000401468 LY9Q9HBG7 655 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 HMX1Q9NP08 348 aaPredicted RBP10.76□□□□□ -0.69
VPS53-203ENST00000401468 MTMR7Q9Y216 660 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 GBF1Q92538 1859 aa10.76□□□□□ -0.69
VPS53-203ENST00000401468 VCANP13611 3396 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms