RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 TEX33O43247 280 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 SFPQP23246 707 aaKnown RBP eCLIP17.02■□□□□ 0.327e-7■□□□□ 10.7
GPC3-202ENST00000394299 ICA1Q05084 483 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L24Q0WX57 530 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 ABCB5Q2M3G0 1257 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 GPATCH4Q5T3I0 446 aaKnown RBP17.02■□□□□ 0.32
GPC3-202ENST00000394299 USP17L6PQ6QN14 398 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 CABP7Q86V35 215 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.02■□□□□ 0.32
GPC3-202ENST00000394299 COL4A5P29400 1685 aa17.02■□□□□ 0.32
GPC3-202ENST00000394299 F5H6K3 240 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 CBFA2T2O43439 604 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 PLCG1P19174 1290 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 PRPHP41219 470 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 KLRC3Q07444 240 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 QRICH1Q2TAL8 776 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 SPATA1Q5VX52 437 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 SUPT20HQ8NEM7 779 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 MKL1Q969V6 931 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 MMTAG2Q9BU76 263 aaKnown RBP17.02■□□□□ 0.31
GPC3-202ENST00000394299 CCSER1Q9C0I3 900 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 NYAP2Q9P242 653 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 SYNRGQ9UMZ2 1314 aa17.02■□□□□ 0.31
GPC3-202ENST00000394299 A0A1W2PRG0 241 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 CCDC93Q567U6 631 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 CC2D2BQ6DHV5 1058 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 RSBN1LQ6PCB5 846 aaPredicted RBP17.01■□□□□ 0.31
GPC3-202ENST00000394299 APTXQ7Z2E3 356 aaKnown RBP17.01■□□□□ 0.31
GPC3-202ENST00000394299 SPICE1Q8N0Z3 855 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 RIC8AQ9NPQ8 531 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 ZNF646O15015 1829 aaPredicted RBP17.01■□□□□ 0.31
GPC3-202ENST00000394299 LAD1O00515 517 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 TNNT1P13805 278 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 PRCPP42785 496 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 CREBRFQ8IUR6 639 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 MTMR8Q96EF0 704 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 MTMR9Q96QG7 549 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 MYH4Q9Y623 1939 aa17.01■□□□□ 0.31
GPC3-202ENST00000394299 KMT5BQ4FZB7 885 aa17■□□□□ 0.31
GPC3-202ENST00000394299 E4F1Q66K89 784 aaPredicted RBP17■□□□□ 0.31
GPC3-202ENST00000394299 FAM177A1Q8N128 213 aaPredicted RBP17■□□□□ 0.31
GPC3-202ENST00000394299 NUDT12Q9BQG2 462 aa17■□□□□ 0.31
GPC3-202ENST00000394299 PSTPIP2Q9H939 334 aa17■□□□□ 0.31
GPC3-202ENST00000394299 SPDYE2BA6NHP3 402 aa17■□□□□ 0.31
GPC3-202ENST00000394299 KLRC4O43908 158 aa17■□□□□ 0.31
GPC3-202ENST00000394299 ZBTB7AO95365 584 aa17■□□□□ 0.31
GPC3-202ENST00000394299 TPM2P07951 284 aa17■□□□□ 0.31
GPC3-202ENST00000394299 SPDYE6P0CI01 402 aa17■□□□□ 0.31
GPC3-202ENST00000394299 ECE1P42892 770 aa17■□□□□ 0.31
GPC3-202ENST00000394299 ADKP55263 362 aaKnown RBP17■□□□□ 0.31
GPC3-202ENST00000394299 SF3B2Q13435 895 aaKnown RBP17■□□□□ 0.31
GPC3-202ENST00000394299 CALCRLQ16602 461 aa17■□□□□ 0.31
GPC3-202ENST00000394299 TMEM179Q6ZVK1 233 aa17■□□□□ 0.31
GPC3-202ENST00000394299 KBTBD4Q9NVX7 518 aa17■□□□□ 0.31
GPC3-202ENST00000394299 PCDHA1Q9Y5I3 950 aa17■□□□□ 0.31
GPC3-202ENST00000394299 SHTN1A0MZ66 631 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 TRIM49BA6NDI0 452 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 POTEMA6NI47 508 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 hCG_1984214I3L0E3 225 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 ENTPD3O75355 529 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 NDUFB10O96000 172 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 BAG6P46379 1132 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 CLK2P49760 499 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 TERF1P54274 439 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 RBM10P98175 930 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 NR1I3Q14994 352 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 CDC37Q16543 378 aaPredicted RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 ZNF658Q5TYW1 1059 aaPredicted RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 CCAR2Q8N163 923 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 ZNF713Q8N859 430 aaPredicted RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 CCDC150Q8NCX0 1101 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 ZNF592Q92610 1267 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 GMLQ99445 158 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 PYM1Q9BRP8 204 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 VIL1P09327 827 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 PMS1P54277 932 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 RTKN2Q8IZC4 609 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 NELFBQ8WX92 580 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 CUL5Q93034 780 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 P2RX7Q99572 595 aaKnown RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.99■□□□□ 0.311e-7■■□□□ 12.9
GPC3-202ENST00000394299 VEZTQ9HBM0 779 aa16.99■□□□□ 0.31
GPC3-202ENST00000394299 ZNF70Q9UC06 446 aaPredicted RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 GREB1LQ9C091 1923 aaPredicted RBP16.99■□□□□ 0.31
GPC3-202ENST00000394299 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
GPC3-202ENST00000394299 IKQ13123 557 aaPredicted RBP16.98■□□□□ 0.31
GPC3-202ENST00000394299 DLGAP5Q15398 846 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 USH1GQ495M9 461 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 KIAA1755Q5JYT7 1200 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 RBM26Q5T8P6 1007 aaKnown RBP16.98■□□□□ 0.31
GPC3-202ENST00000394299 CDKAL1Q5VV42 579 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 IGSF22Q8N9C0 903 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 HPS3Q969F9 1004 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 EEF2KMTQ96G04 330 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 ATF5Q9Y2D1 282 aaPredicted RBP16.98■□□□□ 0.31
GPC3-202ENST00000394299 C10orf71Q711Q0 1435 aa16.98■□□□□ 0.31
GPC3-202ENST00000394299 RIOK3O14730 519 aaKnown RBP16.97■□□□□ 0.31
GPC3-202ENST00000394299 MYO1BO43795 1136 aa16.97■□□□□ 0.31
GPC3-202ENST00000394299 MYRIPQ8NFW9 859 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms