RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 RRAGBQ5VZM2 374 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 PPP1R18Q6NYC8 613 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 SIAH1Q8IUQ4 282 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 ENOX1Q8TC92 643 aaKnown RBP13.57□□□□□ -0.24
USP3-202ENST00000380324 CUL5Q93034 780 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 RIC8AQ9NPQ8 531 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 HDAC9Q9UKV0 1011 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 CTNND2Q9UQB3 1225 aa13.57□□□□□ -0.24
USP3-202ENST00000380324 CBFA2T2O43439 604 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 COBLO75128 1261 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 VIL1P09327 827 aaKnown RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 TXKP42681 527 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 CCZ1BP86790 482 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 CCZ1P86791 482 aaPredicted RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 CDC37Q16543 378 aaPredicted RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 GRIPAP1Q4V328 841 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 RBM26Q5T8P6 1007 aaKnown RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 NIM1KQ8IY84 436 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 SPICE1Q8N0Z3 855 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 DCAF4Q8WV16 495 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.56□□□□□ -0.242e-6■■■□□ 18.4
USP3-202ENST00000380324 IMPACTQ9P2X3 320 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 F5H6K3 240 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 NDUFB10O96000 172 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 PLCG1P19174 1290 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 KLRC3Q07444 240 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 CALCRLQ16602 461 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 CABP7Q86V35 215 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 CDAN1Q8IWY9 1227 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 LRRC15Q8TF66 581 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 SLC16A10Q8TF71 515 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 MKL1Q969V6 931 aa13.56□□□□□ -0.24
USP3-202ENST00000380324 C16orf45Q96MC5 204 aaPredicted RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 ZNF70Q9UC06 446 aaPredicted RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 ATF5Q9Y2D1 282 aaPredicted RBP13.56□□□□□ -0.24
USP3-202ENST00000380324 COL2A1P02458 1487 aaPredicted RBP13.55□□□□□ -0.24
USP3-202ENST00000380324 RPN1P04843 607 aaKnown RBP13.55□□□□□ -0.24
USP3-202ENST00000380324 ZNF18P17022 549 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 SFPQP23246 707 aaKnown RBP eCLIP13.55□□□□□ -0.24
USP3-202ENST00000380324 ERCC5P28715 1186 aaPredicted RBP13.55□□□□□ -0.24
USP3-202ENST00000380324 ARMCX5Q6P1M9 558 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 MTMR8Q96EF0 704 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 GMLQ99445 158 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 CCSER1Q9C0I3 900 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 PSTPIP2Q9H939 334 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 INTS13Q9NVM9 706 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 MAPK8IP1Q9UQF2 711 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 PCDHA1Q9Y5I3 950 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 SMCHD1A6NHR9 2005 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 PPP1R3GB7ZBB8 358 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L15C9J2P7 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L13C9JLJ4 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L11C9JVI0 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L18D6R9N7 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L22D6RA61 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L17D6RBQ6 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L19D6RCP7 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L20D6RJB6 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 TAL1P17542 331 aaPredicted RBP13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L24Q0WX57 530 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 USP17L6PQ6QN14 398 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 CCDC150Q8NCX0 1101 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 AK8Q96MA6 479 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.55□□□□□ -0.24
USP3-202ENST00000380324 ZNRF3Q9ULT6 936 aa13.55□□□□□ -0.24
USP3-202ENST00000380324 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 BRCA1P38398 1863 aaKnown RBP13.54□□□□□ -0.24
USP3-202ENST00000380324 POTEMA6NI47 508 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 MYO1BO43795 1136 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 ECE1P42892 770 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 USH1GQ495M9 461 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 TMEM39BQ9GZU3 492 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 PIM2Q9P1W9 311 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 SCAF8Q9UPN6 1271 aaKnown RBP13.54□□□□□ -0.24
USP3-202ENST00000380324 GDAQ9Y2T3 454 aa13.54□□□□□ -0.24
USP3-202ENST00000380324 A0A1W2PRG0 241 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 CLK2P49760 499 aaKnown RBP13.53□□□□□ -0.24
USP3-202ENST00000380324 MRPL12P52815 198 aaKnown RBP13.53□□□□□ -0.24
USP3-202ENST00000380324 SPDYE2Q495Y8 402 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 VSTM4Q8IW00 320 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 GJA10Q969M2 543 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 UIMC1Q96RL1 719 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 HERC5Q9UII4 1024 aaKnown RBP13.53□□□□□ -0.24
USP3-202ENST00000380324 FER1L6Q2WGJ9 1857 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 SHTN1A0MZ66 631 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 USP27XA6NNY8 438 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 EDIL3O43854 480 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 GOLGA8FQ08AF8 430 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 GOLGA8DPQ0D2H9 430 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 DHX8Q14562 1220 aaKnown RBP13.53□□□□□ -0.24
USP3-202ENST00000380324 MIGA2Q7L4E1 593 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 GMCL1P1Q8NEA9 526 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 RMND1Q9NWS8 449 aa13.53□□□□□ -0.24
USP3-202ENST00000380324 CXCL9Q07325 125 aa13.52□□□□□ -0.24
USP3-202ENST00000380324 ORC2Q13416 577 aaPredicted RBP13.52□□□□□ -0.24
USP3-202ENST00000380324 TPD52L1Q16890 204 aaPredicted RBP13.52□□□□□ -0.24
USP3-202ENST00000380324 TMEM266Q2M3C6 531 aa13.52□□□□□ -0.24
USP3-202ENST00000380324 ZNF658Q5TYW1 1059 aaPredicted RBP13.52□□□□□ -0.24
USP3-202ENST00000380324 SPATA1Q5VX52 437 aa13.52□□□□□ -0.24
USP3-202ENST00000380324 IGSF22Q8N9C0 903 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms