RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 TRERF1Q96PN7 1200 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 ASB2Q96Q27 587 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 UHRF1Q96T88 793 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-202ENST00000375271 STX8Q9UNK0 236 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 SLC4A7Q9Y6M7 1214 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 DYNC1LI2O43237 492 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-202ENST00000375271 ADCY6O43306 1168 aa16.76■□□□□ 0.27
PTCH1-202ENST00000375271 CCL23P55773 120 aa16.76■□□□□ 0.27
PTCH1-202ENST00000375271 C16orf59Q7L2K0 433 aa16.76■□□□□ 0.27
PTCH1-202ENST00000375271 OSBP2Q969R2 916 aa16.76■□□□□ 0.27
PTCH1-202ENST00000375271 A1CFQ9NQ94 594 aaKnown RBP16.76■□□□□ 0.27
PTCH1-202ENST00000375271 GPHNQ9NQX3 736 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-202ENST00000375271 IGKV6D-41A0A0C4DH26 115 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.75■□□□□ 0.27
PTCH1-202ENST00000375271 TSPY2A6NKD2 308 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 PATL2C9JE40 543 aaKnown RBP16.75■□□□□ 0.27
PTCH1-202ENST00000375271 CD4P01730 458 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 TFAP4Q01664 338 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 AAK1Q2M2I8 961 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 BRDTQ58F21 947 aaPredicted RBP16.75■□□□□ 0.27
PTCH1-202ENST00000375271 RASIP1Q5U651 963 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 NSMFQ6X4W1 530 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 EEPD1Q7L9B9 569 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 NEDD1Q8NHV4 660 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 STAG1Q8WVM7 1258 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 AGBL1Q96MI9 1066 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 MTMR7Q9Y216 660 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 MYO9BQ13459 2157 aa16.75■□□□□ 0.27
PTCH1-202ENST00000375271 TTC28Q96AY4 2481 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 GTPBP6O43824 516 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 SUPT20HL2P0C7V6 817 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 CCDC96Q2M329 555 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 IQSEC1Q6DN90 963 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 KIAA1211Q6ZU35 1233 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 FBXO16Q8IX29 292 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 IFNL3Q8IZI9 196 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 FAM133AQ8N9E0 248 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 GMCL1Q96IK5 515 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 FGD4Q96M96 766 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 MPHOSPH6Q99547 160 aaKnown RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 EPB41L4AQ9HCS5 686 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 CXXC1Q9P0U4 656 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 ADD3Q9UEY8 706 aaKnown RBP16.74■□□□□ 0.27
PTCH1-202ENST00000375271 CCPG1Q9ULG6 757 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 PLIN4Q96Q06 1357 aa16.74■□□□□ 0.27
PTCH1-202ENST00000375271 RAD50Q92878 1312 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 ERC2O15083 957 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 ACTN1P12814 892 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 MCCP23508 829 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 FSD1Q9BTV5 496 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 VTA1Q9NP79 307 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 POLR3EQ9NVU0 708 aa16.73■□□□□ 0.27
PTCH1-202ENST00000375271 ZBTB47Q9UFB7 747 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-202ENST00000375271 M0R2C6 588 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 PFKMP08237 780 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 ATP2A2P16615 1042 aaKnown RBP16.72■□□□□ 0.27
PTCH1-202ENST00000375271 SMPD1P17405 629 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 CPT1AP50416 773 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 NKX3-2P78367 333 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 PPARAQ07869 468 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 FAM47CQ5HY64 1035 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 TSHZ3Q63HK5 1081 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 KCTD1Q719H9 257 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 NOC4LQ9BVI4 516 aaKnown RBP16.72■□□□□ 0.27
PTCH1-202ENST00000375271 KATNBL1Q9H079 304 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 TRPV6Q9H1D0 765 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 GNEQ9Y223 722 aaKnown RBP16.72■□□□□ 0.27
PTCH1-202ENST00000375271 Q9Y3F1 56 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 PCDHA11Q9Y5I1 949 aa16.72■□□□□ 0.27
PTCH1-202ENST00000375271 SOWAHBA6NEL2 793 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 B4GALT4O60513 344 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 RABGGTBP53611 331 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 PSMC6P62333 389 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 ADGRE1Q14246 886 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 SLC43A3Q8NBI5 491 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 TOMM22Q9NS69 142 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 CYP39A1Q9NYL5 469 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 RCAN3Q9UKA8 241 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 NOD1Q9Y239 953 aa16.71■□□□□ 0.27
PTCH1-202ENST00000375271 YBX2Q9Y2T7 364 aaKnown RBP16.71■□□□□ 0.27
PTCH1-202ENST00000375271 ASTN1O14525 1302 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 UMODL1Q5DID0 1318 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 GBF1Q92538 1859 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 CTAGE5O15320 804 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 RANBP6O60518 1105 aaKnown RBP16.7■□□□□ 0.26
PTCH1-202ENST00000375271 MYL3P08590 195 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 TMEM67Q5HYA8 995 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 RCSD1Q6JBY9 416 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 DEFB128Q7Z7B8 93 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 SCLYQ96I15 445 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 PDGFCQ9NRA1 345 aa16.7■□□□□ 0.26
PTCH1-202ENST00000375271 PTPDC1A2A3K4 754 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 KIF28PB7ZC32 967 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 PLA2G6O60733 806 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 SNAP25P60880 206 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 RETREG2Q8NC44 543 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 OR6J1Q8NGC5 347 aa16.69■□□□□ 0.26
PTCH1-202ENST00000375271 FTOQ9C0B1 505 aaKnown RBP eCLIP16.69■□□□□ 0.26
PTCH1-202ENST00000375271 ALDH8A1Q9H2A2 487 aaPredicted RBP16.69■□□□□ 0.26
PTCH1-202ENST00000375271 PRR12Q9ULL5 1215 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms