RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 ISM2Q6H9L7 571 aa8.84□□□□□ -0.99
USP48-203ENST00000374732 HIBCHQ6NVY1 386 aaPredicted RBP8.84□□□□□ -0.99
USP48-203ENST00000374732 NCCRP1Q6ZVX7 275 aaPredicted RBP8.84□□□□□ -0.99
USP48-203ENST00000374732 ZMAT2Q96NC0 199 aaKnown RBP8.84□□□□□ -0.99
USP48-203ENST00000374732 C19orf44Q9H6X5 657 aa8.84□□□□□ -0.99
USP48-203ENST00000374732 SPG7Q9UQ90 795 aa8.84□□□□□ -0.99
USP48-203ENST00000374732 IPPQ9Y573 584 aa8.84□□□□□ -0.99
USP48-203ENST00000374732 ATP7BP35670 1465 aa8.84□□□□□ -1
USP48-203ENST00000374732 TIPRLO75663 272 aa8.83□□□□□ -1
USP48-203ENST00000374732 STAT3P40763 770 aa8.83□□□□□ -1
USP48-203ENST00000374732 MTHFSP49914 203 aa8.83□□□□□ -1
USP48-203ENST00000374732 CD83Q01151 205 aa8.83□□□□□ -1
USP48-203ENST00000374732 BTG3Q14201 252 aaPredicted RBP8.83□□□□□ -1
USP48-203ENST00000374732 LRRC23Q53EV4 343 aaPredicted RBP8.83□□□□□ -1
USP48-203ENST00000374732 C6orf118Q5T5N4 469 aa8.83□□□□□ -1
USP48-203ENST00000374732 ZNF804AQ7Z570 1209 aa8.83□□□□□ -1
USP48-203ENST00000374732 ARHGAP22Q7Z5H3 698 aa8.83□□□□□ -1
USP48-203ENST00000374732 ACMSDQ8TDX5 336 aa8.83□□□□□ -1
USP48-203ENST00000374732 NSRP1Q9H0G5 558 aaKnown RBP8.83□□□□□ -1
USP48-203ENST00000374732 KCTD10Q9H3F6 313 aa8.83□□□□□ -1
USP48-203ENST00000374732 SMYD2Q9NRG4 433 aa8.83□□□□□ -1
USP48-203ENST00000374732 KIF20BQ96Q89 1820 aa8.83□□□□□ -1
USP48-203ENST00000374732 KRBA1A5PL33 1030 aa8.83□□□□□ -1
USP48-203ENST00000374732 HCLS1P14317 486 aaPredicted RBP8.83□□□□□ -1
USP48-203ENST00000374732 DESP17661 470 aa8.83□□□□□ -1
USP48-203ENST00000374732 FOXK1P85037 733 aa8.83□□□□□ -1
USP48-203ENST00000374732 CCNG2Q16589 344 aa8.83□□□□□ -1
USP48-203ENST00000374732 MAJINQ3KP22 176 aa8.83□□□□□ -1
USP48-203ENST00000374732 NUTM2DQ5VT03 806 aaPredicted RBP8.83□□□□□ -1
USP48-203ENST00000374732 NUGGCQ68CJ6 796 aa8.83□□□□□ -1
USP48-203ENST00000374732 SPICE1Q8N0Z3 855 aa8.83□□□□□ -1
USP48-203ENST00000374732 CARNMT1Q8N4J0 409 aa8.83□□□□□ -1
USP48-203ENST00000374732 MSANTD4Q8NCY6 345 aa8.83□□□□□ -1
USP48-203ENST00000374732 NPLOC4Q8TAT6 608 aa8.83□□□□□ -1
USP48-203ENST00000374732 ARL8AQ96BM9 186 aa8.83□□□□□ -1
USP48-203ENST00000374732 CRBNQ96SW2 442 aa8.83□□□□□ -1
USP48-203ENST00000374732 CABP2Q9NPB3 220 aa8.83□□□□□ -1
USP48-203ENST00000374732 FERP16591 822 aa8.83□□□□□ -1
USP48-203ENST00000374732 TTC39CQ8N584 583 aa8.83□□□□□ -1
USP48-203ENST00000374732 VPS50Q96JG6 964 aa8.83□□□□□ -1
USP48-203ENST00000374732 PRAM1Q96QH2 718 aa8.83□□□□□ -1
USP48-203ENST00000374732 SRRTQ9BXP5 876 aaKnown RBP8.83□□□□□ -1
USP48-203ENST00000374732 ZCCHC17Q9NP64 241 aaKnown RBP8.83□□□□□ -1
USP48-203ENST00000374732 HOOK1Q9UJC3 728 aaKnown RBP8.83□□□□□ -1
USP48-203ENST00000374732 PCDHGB3Q9Y5G1 929 aa8.83□□□□□ -1
USP48-203ENST00000374732 DISP2A7MBM2 1401 aa8.82□□□□□ -1
USP48-203ENST00000374732 COL3A1P02461 1466 aaPredicted RBP8.82□□□□□ -1
USP48-203ENST00000374732 IQCA1LA6NCM1 817 aa8.82□□□□□ -1
USP48-203ENST00000374732 P4HA2O15460 535 aa8.82□□□□□ -1
USP48-203ENST00000374732 LDHBP07195 334 aaKnown RBP8.82□□□□□ -1
USP48-203ENST00000374732 NFE2Q16621 373 aaPredicted RBP8.82□□□□□ -1
USP48-203ENST00000374732 NEK5Q6P3R8 708 aa8.82□□□□□ -1
USP48-203ENST00000374732 GCC1Q96CN9 775 aa8.82□□□□□ -1
USP48-203ENST00000374732 SPDYE3A6NKU9 549 aa8.82□□□□□ -1
USP48-203ENST00000374732 TCEA3O75764 348 aa8.82□□□□□ -1
USP48-203ENST00000374732 AKAP17AQ02040 695 aaKnown RBP8.82□□□□□ -1
USP48-203ENST00000374732 CUL4BQ13620 913 aa8.82□□□□□ -1
USP48-203ENST00000374732 TTLL12Q14166 644 aaPredicted RBP8.82□□□□□ -1
USP48-203ENST00000374732 PDE3AQ14432 1141 aa8.82□□□□□ -1
USP48-203ENST00000374732 SWSAP1Q6NVH7 229 aa8.82□□□□□ -1
USP48-203ENST00000374732 NEK11Q8NG66 645 aa8.82□□□□□ -1
USP48-203ENST00000374732 MTMR12Q9C0I1 747 aa8.82□□□□□ -1
USP48-203ENST00000374732 HOMER2Q9NSB8 354 aa8.82□□□□□ -1
USP48-203ENST00000374732 STAP2Q9UGK3 403 aa8.82□□□□□ -1
USP48-203ENST00000374732 EIF2B4Q9UI10 523 aaKnown RBP8.82□□□□□ -1
USP48-203ENST00000374732 STAG3Q9UJ98 1225 aa8.82□□□□□ -1
USP48-203ENST00000374732 KIAA1257Q9ULG3 409 aa8.82□□□□□ -1
USP48-203ENST00000374732 EPN1Q9Y6I3 576 aaPredicted RBP8.82□□□□□ -1
USP48-203ENST00000374732 KDM2BQ8NHM5 1336 aa8.82□□□□□ -1
USP48-203ENST00000374732 RGPD1P0DJD0 1748 aa8.82□□□□□ -1
USP48-203ENST00000374732 TEX28O15482 410 aa8.81□□□□□ -1
USP48-203ENST00000374732 KRT13P13646 458 aa8.81□□□□□ -1
USP48-203ENST00000374732 LMOD1P29536 600 aaPredicted RBP8.81□□□□□ -1
USP48-203ENST00000374732 ANKRD39Q53RE8 183 aa8.81□□□□□ -1
USP48-203ENST00000374732 PNPLA6Q8IY17 1366 aa8.81□□□□□ -1
USP48-203ENST00000374732 PPP1R14CQ8TAE6 165 aa8.81□□□□□ -1
USP48-203ENST00000374732 SMARCC2Q8TAQ2 1214 aa8.81□□□□□ -1
USP48-203ENST00000374732 SAAL1Q96ER3 474 aa8.81□□□□□ -1
USP48-203ENST00000374732 TCEANC2Q96MN5 208 aa8.81□□□□□ -1
USP48-203ENST00000374732 NLRP3Q96P20 1036 aa8.81□□□□□ -1
USP48-203ENST00000374732 ABCA3Q99758 1704 aa8.81□□□□□ -1
USP48-203ENST00000374732 HERC5Q9UII4 1024 aaKnown RBP8.81□□□□□ -1
USP48-203ENST00000374732 EDARQ9UNE0 448 aa8.81□□□□□ -1
USP48-203ENST00000374732 ALDH1L1O75891 902 aa8.81□□□□□ -1
USP48-203ENST00000374732 HSD17B2P37059 387 aa8.81□□□□□ -1
USP48-203ENST00000374732 USP8P40818 1118 aa8.81□□□□□ -1
USP48-203ENST00000374732 PABPC4Q13310 644 aaKnown RBP eCLIP8.81□□□□□ -11e-12■□□□□ 9.6
USP48-203ENST00000374732 METTL3Q86U44 580 aaKnown RBP8.81□□□□□ -1
USP48-203ENST00000374732 CCDC84Q86UT8 332 aaPredicted RBP8.81□□□□□ -1
USP48-203ENST00000374732 NLRP14Q86W24 1093 aa8.81□□□□□ -1
USP48-203ENST00000374732 NUP133Q8WUM0 1156 aa8.81□□□□□ -1
USP48-203ENST00000374732 TRIM8Q9BZR9 551 aa8.81□□□□□ -1
USP48-203ENST00000374732 MRPL46Q9H2W6 279 aaKnown RBP8.81□□□□□ -1
USP48-203ENST00000374732 TCP11L1Q9NUJ3 509 aa8.81□□□□□ -1
USP48-203ENST00000374732 TUBA8Q9NY65 449 aaPredicted RBP8.81□□□□□ -1
USP48-203ENST00000374732 EIF3CLB5ME19 914 aaKnown RBP8.8□□□□□ -1
USP48-203ENST00000374732 ATP9BO43861 1147 aa8.8□□□□□ -1
USP48-203ENST00000374732 ATP5DP30049 168 aa8.8□□□□□ -1
USP48-203ENST00000374732 ATP6V1E1P36543 226 aa8.8□□□□□ -1
USP48-203ENST00000374732 NR2C2P49116 596 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms