RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 PCDHB6Q9Y5E3 794 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 PLA2R1Q13018 1463 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 NDC80O14777 642 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 SESN3P58005 492 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 GRK7Q8WTQ7 553 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 CUEDC2Q9H467 287 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 CDK12Q9NYV4 1490 aaPredicted RBP17.47■□□□□ 0.39
COL17A1-202ENST00000369733 SP4Q02446 784 aa17.47■□□□□ 0.39
COL17A1-202ENST00000369733 KRT31Q15323 416 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 FAM26FQ5R3K3 315 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 HARSP12081 509 aaKnown RBP17.46■□□□□ 0.39
COL17A1-202ENST00000369733 LGSNQ5TDP6 509 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 ARMC9Q7Z3E5 817 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 VPS41P49754 854 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 CYP2J2P51589 502 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 TCP11X2Q5H9J9 407 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 DCUN1D2Q6PH85 259 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.46■□□□□ 0.39
COL17A1-202ENST00000369733 KIF3CO14782 793 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 BACH1O14867 736 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 FTCDO95954 541 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 PHKG2P15735 406 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 CYP27A1Q02318 531 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 PCDHA13Q9Y5I0 950 aa17.46■□□□□ 0.39
COL17A1-202ENST00000369733 RPAP1Q9BWH6 1393 aaPredicted RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 BCAMP50895 628 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ZBTB38Q8NAP3 1195 aaPredicted RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 RILPQ96NA2 401 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 THAP9Q9H5L6 903 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ABCC12Q96J65 1359 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 CTNND1O60716 968 aaKnown RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 EIF4A3P38919 411 aaKnown RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ARHGEF25Q86VW2 580 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 N4BP2L2Q92802 583 aaPredicted RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 NGLY1Q96IV0 654 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 PHKA1P46020 1223 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ORAI2Q96SN7 254 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 PCDHA12Q9UN75 941 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ATP8A1Q9Y2Q0 1164 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 BZW2Q9Y6E2 419 aaKnown RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 IFNAR1P17181 557 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 SLC1A4P43007 532 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 MAN2A1Q16706 1144 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ARMCX5Q6P1M9 558 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 EMBQ6PCB8 327 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 WHAMMQ8TF30 809 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 EPSTI1Q96J88 318 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 PUS7LQ9H0K6 701 aaKnown RBP17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ST7Q9NRC1 585 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 ATP8A2Q9NTI2 1148 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 PASKQ96RG2 1323 aa17.45■□□□□ 0.38
COL17A1-202ENST00000369733 LRRD1A4D1F6 860 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 TTC16Q8NEE8 873 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 MPHOSPH6Q99547 160 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 GPHNQ9NQX3 736 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 SPATS2LQ9NUQ6 558 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 MLH3Q9UHC1 1453 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 PGRMC1O00264 195 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 UFL1O94874 794 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 PCCAP05165 728 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 CCDC89Q8N998 374 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 EYA3Q99504 573 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 TYW1Q9NV66 732 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 EXOC3L4Q17RC7 722 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 AEBP2Q6ZN18 517 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 DDX39AO00148 427 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 LAD1O00515 517 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 CASQ2O14958 399 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 GGCXP38435 758 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 GOLGA8HP0CJ92 632 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 PTPN12Q05209 780 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 DHX9Q08211 1270 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 USH1GQ495M9 461 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 FAM133BQ5BKY9 247 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 MB21D1Q8N884 522 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 CNOT10Q9H9A5 744 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 METTL14Q9HCE5 456 aaKnown RBP17.44■□□□□ 0.38
COL17A1-202ENST00000369733 GJB4Q9NTQ9 266 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 MRFAP1Q9Y605 127 aa17.44■□□□□ 0.38
COL17A1-202ENST00000369733 PRAMEF22A3QJZ6 481 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 KLRF2D3W0D1 207 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 ADD2P35612 726 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 PDCLQ13371 301 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 TPH2Q8IWU9 490 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 RUNDC3BQ96NL0 473 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 RTCBQ9Y3I0 505 aaKnown RBP17.43■□□□□ 0.38
COL17A1-202ENST00000369733 HMGB1P1B2RPK0 211 aaPredicted RBP17.43■□□□□ 0.38
COL17A1-202ENST00000369733 KIFC2Q96AC6 838 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 NOVA2Q9UNW9 492 aaKnown RBP17.43■□□□□ 0.38
COL17A1-202ENST00000369733 DAAM1Q9Y4D1 1078 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 MYO5CQ9NQX4 1742 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 SRGAP2O75044 1071 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 HOMEZQ8IX15 550 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 PCDHA4Q9UN74 947 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 SEMA3EO15041 775 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 ATF2P15336 505 aa17.43■□□□□ 0.38
COL17A1-202ENST00000369733 TPX2Q9ULW0 747 aaKnown RBP17.43■□□□□ 0.38
COL17A1-202ENST00000369733 GUCY2CP25092 1073 aa17.42■□□□□ 0.38
COL17A1-202ENST00000369733 KIF11P52732 1056 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms