RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SETQ01105 290 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 RESTQ13127 1097 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 PPFIA1Q13136 1202 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 HHIPL2Q6UWX4 724 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 PSPC1Q8WXF1 523 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 CNPPD1Q9BV87 410 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 BCO2Q9BYV7 579 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ATP8A2Q9NTI2 1148 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 IFT57Q9NWB7 429 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ARPP21Q9UBL0 812 aaPredicted RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 TPX2Q9ULW0 747 aaKnown RBP4.53□□□□□ -1.68
USH2A-202ENST00000366942 FRMD4BQ9Y2L6 1034 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 RIPOR2Q9Y4F9 1068 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 TACC3Q9Y6A5 838 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 IQGAP2Q13576 1575 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 EGFRP00533 1210 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 RALAP11233 206 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 PFKPQ01813 784 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 CSRNP2Q9H175 543 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 SENP2Q9HC62 589 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 INPP5FQ9Y2H2 1132 aa4.53□□□□□ -1.68
USH2A-202ENST00000366942 ZNF804BA4D1E1 1349 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 KIF21BO75037 1637 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 RRN3P2A6NIE6 340 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 CBFA2T2O43439 604 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 PPFIA2O75334 1257 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TADA2AO75478 443 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 PDE8BO95263 885 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 ATP2A2P16615 1042 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 PTCH1Q13635 1447 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 POLA2Q14181 598 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 ARL13BQ3SXY8 428 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 DSG4Q86SJ6 1040 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TTC39CQ8N584 583 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 OR6J1Q8NGC5 347 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 GDAP1Q8TB36 358 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 ARHGEF1Q92888 912 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 FAM204AQ9H8W3 233 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 RIC8AQ9NPQ8 531 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 HCLS1P14317 486 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 TNNC1P63316 161 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SYT17Q9BSW7 474 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 ARGLU1Q9NWB6 273 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 PRAMEF22A3QJZ6 481 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 NKRFO15226 690 aaKnown RBP eCLIP4.52□□□□□ -1.69
USH2A-202ENST00000366942 GAS7O60861 476 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 CDC45O75419 566 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 CD19P15391 556 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 PHKA2P46019 1235 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 GMPSP49915 693 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 KIF5AQ12840 1032 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 MAP1SQ66K74 1059 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 FBXO11Q86XK2 927 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TMTC1Q8IUR5 882 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SP8Q8IXZ3 490 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 DCP1BQ8IZD4 617 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SLC44A5Q8NCS7 719 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TDRD7Q8NHU6 1098 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SAMD11Q96NU1 681 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SPAG5Q96R06 1193 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 ANAPC5Q9UJX4 755 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SPATA31A3Q5VYP0 1347 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TREHO43280 583 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 HDLBPQ00341 1268 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 ARHGEF7Q14155 803 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 LRRC32Q14392 662 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SPA17Q15506 151 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TTC31Q49AM3 519 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SLC9C2Q5TAH2 1124 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 FBXO46Q6PJ61 603 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 PRR23BQ6ZRT6 265 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 DDX53Q86TM3 631 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 CCDC65Q8IXS2 484 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 GPR161Q8N6U8 529 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 CAPSLQ8WWF8 208 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 UPF1Q92900 1129 aaKnown RBP eCLIP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SLC4A9Q96Q91 983 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 CRAMP1Q96RY5 1269 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 HMG20BQ9P0W2 317 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SAE1Q9UBE0 346 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SUSD2Q9UGT4 822 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.52□□□□□ -1.69
USH2A-202ENST00000366942 HERC5Q9UII4 1024 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 V9GYY5 206 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 ZNF644Q9H582 1327 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 GOLGA6L7A0A1B0GV03 622 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 GLTPD2A6NH11 291 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 CXCL11O14625 94 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 TLL1O43897 1013 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 USO1O60763 962 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 S100BP04271 92 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 ASIC1P78348 528 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 DEUP1Q05D60 604 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 EXOSC9Q06265 439 aaKnown RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 LRRC31Q6UY01 552 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 SDCCAG8Q86SQ7 713 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 SUN3Q8TAQ9 357 aa4.52□□□□□ -1.69
USH2A-202ENST00000366942 FAM49AQ9H0Q0 323 aaPredicted RBP4.52□□□□□ -1.69
USH2A-202ENST00000366942 A2ML1A8K2U0 1454 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ERVV-1B6SEH8 477 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms