RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 PPP1R9AQ9ULJ8 1098 aa10.33□□□□□ -0.76
HMGB1P39-201ENST00000366304 LHX6Q9UPM6 363 aa10.33□□□□□ -0.76
HMGB1P39-201ENST00000366304 CYP2D7A0A087X1C5 515 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 ZBBXA8MT70 800 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 WDR46O15213 610 aaKnown RBP10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 ICA1Q05084 483 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 SLFN5Q08AF3 891 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 TMEM67Q5HYA8 995 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 TMEM179Q6ZVK1 233 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 MSL3Q8N5Y2 521 aaKnown RBP10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 OXER1Q8TDS5 423 aa10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 NUP88Q99567 741 aaPredicted RBP10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 MTIF3Q9H2K0 278 aaKnown RBP10.32□□□□□ -0.76
HMGB1P39-201ENST00000366304 LCHNA4D1U4 455 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 TLR3O15455 904 aaKnown RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 POLR3DP05423 398 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 EEF2P13639 858 aaKnown RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 G3BP1Q13283 466 aaKnown RBP eCLIP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 ITGA7Q13683 1181 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 SLFNL1Q499Z3 407 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 CCDC158Q5M9N0 1113 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 FAM83BQ5T0W9 1011 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 TMCO2Q7Z6W1 182 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 FAM178BQ8IXR5 827 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 FAM9BQ8IZU0 186 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 SDR42E1Q8WUS8 393 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 CCDC8Q9H0W5 538 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 GPR108Q9NPR9 543 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 MCM9Q9NXL9 1143 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 USP34Q70CQ2 3546 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 TRIOO75962 3097 aa10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 COL4A4P53420 1690 aaPredicted RBP10.31□□□□□ -0.76
HMGB1P39-201ENST00000366304 E9PSI1 815 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 CYP2C9P11712 490 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 IL9P15248 144 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 CNTN2Q02246 1040 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 SNRNP48Q6IEG0 339 aaKnown RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 ARMCX2Q7L311 632 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 DEFB128Q7Z7B8 93 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 CCDC144CPQ8IYA2 1237 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 GJD3Q8N144 294 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 LCORLQ8N3X6 602 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 PPP1R13LQ8WUF5 828 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 EAF2Q96CJ1 260 aaPredicted RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 UIMC1Q96RL1 719 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 API5Q9BZZ5 524 aaKnown RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 DCP1AQ9NPI6 582 aaPredicted RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 TRMT13Q9NUP7 481 aaKnown RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 GNEQ9Y223 722 aaKnown RBP10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 NAV1Q8NEY1 1877 aa10.3□□□□□ -0.76
HMGB1P39-201ENST00000366304 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 PRKAB2O43741 272 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 GNAI3P08754 354 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 HERC6Q8IVU3 1022 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 TRMT2AQ8IZ69 625 aaKnown RBP10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 GDPD5Q8WTR4 605 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 KRTAP3-3Q9BYR6 98 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 KRTAP3-2Q9BYR7 98 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 ARHGEF10LQ9HCE6 1279 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 HDAC5Q9UQL6 1122 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 CFAP54Q96N23 3096 aa10.29□□□□□ -0.76
HMGB1P39-201ENST00000366304 MAGEB6P1A0A0J9YX57 407 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 TCRBV5S4A2TA0A5A2 114 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 SOWAHBA6NEL2 793 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 CHGBP05060 677 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 SMPD1P17405 629 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 SLC4A3P48751 1232 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 TNFAIP2Q03169 654 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 FSCN1Q16658 493 aaKnown RBP10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 RPUSD2Q8IZ73 545 aaKnown RBP10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 DDX11Q96FC9 970 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 TEX13BQ9BXU2 312 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 ALDH8A1Q9H2A2 487 aaPredicted RBP10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 ABHD16BQ9H3Z7 469 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 UBE2ZQ9H832 354 aaPredicted RBP10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 SPC25Q9HBM1 224 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 PDGFCQ9NRA1 345 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 ZNF318Q5VUA4 2279 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 MCM3APO60318 1980 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 SCN5AQ14524 2016 aa10.28□□□□□ -0.76
HMGB1P39-201ENST00000366304 ZFHX2Q9C0A1 2572 aaPredicted RBP10.27□□□□□ -0.76
HMGB1P39-201ENST00000366304 IGSF3O75054 1194 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 BCAR3O75815 825 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 GNAI2P04899 355 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 PDE6AP16499 860 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 CDK8P49336 464 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 TCTN1Q2MV58 587 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 LEXMQ3ZCV2 418 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 HFE2Q6ZVN8 426 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 TLK2Q86UE8 772 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 CERS3Q8IU89 383 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 CPXCR1Q8N123 301 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZNF687Q8N1G0 1237 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 SLF1Q9BQI6 1058 aa10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 RAVER2Q9HCJ3 691 aaKnown RBP10.27□□□□□ -0.77
HMGB1P39-201ENST00000366304 ATP2A1O14983 1001 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 DYNC1LI2O43237 492 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms