RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RETREG2Q8NC44 543 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 TCEANC2Q96MN5 208 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 ARAP2Q8WZ64 1704 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 IRF6O14896 467 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 MYL3P08590 195 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 FAM110CQ1W6H9 321 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 RILPL1Q5EBL4 403 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 KRT79Q5XKE5 535 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 SAPCD2Q86UD0 394 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 SGMS1Q86VZ5 419 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.43□□□□□ -0.74
UPF2-202ENST00000357604 SNCAIPQ9Y6H5 919 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 CNTNAP1P78357 1384 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 CCNT1O60563 726 aaKnown RBP10.43□□□□□ -0.74
UPF2-202ENST00000357604 JAKMIP3Q5VZ66 844 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 RNF180Q86T96 592 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 DACH1Q9UI36 760 aa10.43□□□□□ -0.74
UPF2-202ENST00000357604 PSMC4P43686 418 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 ORC2Q13416 577 aaPredicted RBP10.42□□□□□ -0.74
UPF2-202ENST00000357604 CYB5R4Q7L1T6 521 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 MIER3Q7Z3K6 550 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 AK9Q5TCS8 1911 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 PDIA3P30101 505 aaKnown RBP10.42□□□□□ -0.74
UPF2-202ENST00000357604 CPT1AP50416 773 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SEPT14Q6ZU15 432 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 CDAN1Q8IWY9 1227 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 ZFPM1Q8IX07 1006 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SPATA32Q96LK8 384 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 NUP88Q99567 741 aaPredicted RBP10.42□□□□□ -0.74
UPF2-202ENST00000357604 APBA2Q99767 749 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 WDR90Q96KV7 1748 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 IRS2Q9Y4H2 1338 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 KIF3CO14782 793 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SH3D19Q5HYK7 790 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 PLA2G4DQ86XP0 818 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 RIOX2Q8IUF8 465 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SCAND2PQ9GZW5 306 aaPredicted RBP10.42□□□□□ -0.74
UPF2-202ENST00000357604 PRR12Q9ULL5 1215 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 PCDHAC2Q9Y5I4 1007 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 LAD1O00515 517 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 ME1P48163 572 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SLFNL1Q499Z3 407 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 MSL3Q8N5Y2 521 aaKnown RBP10.42□□□□□ -0.74
UPF2-202ENST00000357604 ATG4CQ96DT6 458 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 SPATC1LQ9H0A9 340 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 POLR3EQ9NVU0 708 aa10.42□□□□□ -0.74
UPF2-202ENST00000357604 GAS7O60861 476 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 TBCAO75347 108 aaKnown RBP10.41□□□□□ -0.74
UPF2-202ENST00000357604 SSBP05455 408 aaKnown RBP eCLIP10.41□□□□□ -0.74
UPF2-202ENST00000357604 CYP2B6P20813 491 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 HOXA7P31268 230 aaPredicted RBP10.41□□□□□ -0.74
UPF2-202ENST00000357604 DGKZQ13574 1117 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 NECAB1Q8N987 351 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 ANKS1AQ92625 1134 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 FAM167AQ96KS9 214 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 C12orf42Q96LP6 360 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 SNED1Q8TER0 1413 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 KDM3AQ9Y4C1 1321 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 SMC2O95347 1197 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 PDHBP11177 359 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 JAK3P52333 1124 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 RIC8AQ9NPQ8 531 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 PLIN4Q96Q06 1357 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 PSAPP07602 524 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 IFNAR1P17181 557 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 VEGFBP49765 207 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 DNERQ8NFT8 737 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 MAP7D2Q96T17 732 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 WDR11Q9BZH6 1224 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 LOC102724159A0A0B4J2E5 919 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 BTBD19C9JJ37 291 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 RPLP2P05387 115 aaKnown RBP10.41□□□□□ -0.74
UPF2-202ENST00000357604 PWP2Q15269 919 aaKnown RBP10.41□□□□□ -0.74
UPF2-202ENST00000357604 CALCRLQ16602 461 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 LETM2Q2VYF4 491 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 KANK3Q6NY19 840 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 PIK3AP1Q6ZUJ8 805 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 CTU1Q7Z7A3 348 aaKnown RBP10.41□□□□□ -0.74
UPF2-202ENST00000357604 NEK8Q86SG6 692 aa10.41□□□□□ -0.74
UPF2-202ENST00000357604 STX6O43752 255 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 NMT2O60551 498 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 ERCC3P19447 782 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 TRAPPC10P48553 1259 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 QRICH1Q2TAL8 776 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 FAM47CQ5HY64 1035 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 HACE1Q8IYU2 909 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 GLG1Q92896 1179 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 CLMNQ96JQ2 1002 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 RMDN3Q96TC7 470 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 PAPPA2Q9BXP8 1791 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 ASTN2O75129 1339 aaPredicted RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 PHLPP2Q6ZVD8 1323 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 CCDC88AQ3V6T2 1871 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 LETM1O95202 739 aaPredicted RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 GH1P01241 217 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 PFKFB3Q16875 520 aaPredicted RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 TMEM87AQ8NBN3 555 aa10.4□□□□□ -0.74
UPF2-202ENST00000357604 PCSK9Q8NBP7 692 aaKnown RBP10.4□□□□□ -0.74
UPF2-202ENST00000357604 ATP6V0A1Q93050 837 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms