RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PTPROQ16827 1216 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 C10orf76Q5T2E6 689 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC102BQ68D86 513 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC62Q6P9F0 684 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SDCCAG3Q96C92 435 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PPP1R2P1Q96PQ5 205 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 KAT14Q9H8E8 782 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SART1O43290 800 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 BBOX1O75936 387 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 RAG1P15918 1043 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 STX17P56962 302 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 NFX1Q12986 1120 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 ORC2Q13416 577 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 VPS72Q15906 364 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 TTC39CQ8N584 583 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 POTEMA6NI47 508 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 AP3B1O00203 1094 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SERPINB2P05120 415 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 ATP2B4P23634 1241 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 POTEHQ6S545 545 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 POTEGQ6S5H5 508 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SNX21Q969T3 373 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 TEX12Q9BXU0 123 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CUEDC2Q9H467 287 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 IRAK4Q9NWZ3 460 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EMILIN1Q9Y6C2 1016 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SNTNA6NMZ2 147 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PFDN1O60925 122 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 RLBP1P12271 317 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EIF2B5Q13144 721 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 MCM10Q7L590 875 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 URGCPQ8TCY9 931 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 ORAI2Q96SN7 254 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 GINS2Q9Y248 185 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CETN3O15182 167 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 GTF2IP78347 998 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 IP6K1Q92551 441 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CARD14Q9BXL6 1004 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 JAG2Q9Y219 1238 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 HYOU1Q9Y4L1 999 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CNTRLQ7Z7A1 2325 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 FKTNO75072 461 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EPHX2P34913 555 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EIF3BP55884 814 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 EXOSC9Q06265 439 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 FLOT2Q14254 428 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 BRD3Q15059 726 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 MFSD4BQ5TF39 518 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PGBD3Q8N328 593 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 CATSPER1Q8NEC5 780 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 OGFRQ9NZT2 677 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 NFU1Q9UMS0 254 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 STX8Q9UNK0 236 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PCDHB13Q9Y5F0 798 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 E7ENQ6 273 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 RARBP10826 455 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SERPINB4P48594 390 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PURAQ00577 322 aaKnown RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 KRT17Q04695 432 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 SNAPC2Q13487 334 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 IRAK1BP1Q5VVH5 260 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 LMBRD2Q68DH5 695 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PDZD4Q76G19 769 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 GANCQ8TET4 914 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 TRIM11Q96F44 468 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 NDUFA13Q9P0J0 144 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 TRIM17Q9Y577 477 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 COL5A2P05997 1499 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 FLT4P35916 1363 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PDE4DQ08499 809 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 NEDD9Q14511 834 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PLCB4Q15147 1175 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 TTC19Q6DKK2 380 aaPredicted RBP3.61□□□□□ -1.83
CSMD3-202ENST00000339701 LCA5Q86VQ0 697 aa3.61□□□□□ -1.83
CSMD3-202ENST00000339701 PER1O15534 1290 aaPredicted RBP3.6□□□□□ -1.83
CSMD3-202ENST00000339701 RCAN1P53805 252 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 MIER3Q7Z3K6 550 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 LDHDQ86WU2 507 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 ANKRD13AQ8IZ07 590 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 MLXIPQ9HAP2 919 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 CTTNBP2NLQ9P2B4 639 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 POLKQ9UBT6 870 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 MYH11P35749 1972 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.6□□□□□ -1.83
CSMD3-202ENST00000339701 USP17L3A6NCW0 530 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 USP17L4A6NCW7 530 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 M0R3G1 203 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC15Q0P6D6 951 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 PTPAQ15257 358 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 USP17L1Q7RTZ2 530 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 IFT20Q8IY31 132 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 SYCP3Q8IZU3 236 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC24Q8N4L8 307 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 UBL4BQ8N7F7 174 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 MYH7BA7E2Y1 1941 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 IGSF1Q8N6C5 1336 aa3.6□□□□□ -1.83
CSMD3-202ENST00000339701 MANSC4A6NHS7 340 aaPredicted RBP3.6□□□□□ -1.83
CSMD3-202ENST00000339701 PPARGP37231 505 aaPredicted RBP3.6□□□□□ -1.83
CSMD3-202ENST00000339701 GPATCH4Q5T3I0 446 aaKnown RBP3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms