RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 DMP1Q13316 513 aaPredicted RBP11.21□□□□□ -0.62
CHD3-201ENST00000330494 LONRF2Q1L5Z9 754 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 HS1BP3Q53T59 392 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 SSH2Q76I76 1423 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 RASGRF1Q13972 1273 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 PCIF1Q9H4Z3 704 aa11.21□□□□□ -0.62
CHD3-201ENST00000330494 CLIC2O15247 247 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ITIH3Q06033 890 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 SEPT6Q14141 434 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 SMC6Q96SB8 1091 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 GJB4Q9NTQ9 266 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 STAP2Q9UGK3 403 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ADCY10Q96PN6 1610 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 EBAG9O00559 213 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 EPHA10Q5JZY3 1008 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 DPP9Q86TI2 863 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 FMNL3Q8IVF7 1028 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 SH3RF3Q8TEJ3 882 aaPredicted RBP11.2□□□□□ -0.62
CHD3-201ENST00000330494 ERO1AQ96HE7 468 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 RGS12O14924 1447 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ANKARQ7Z5J8 1434 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 KCNK3O14649 394 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 FMNL1O95466 1100 aaPredicted RBP11.2□□□□□ -0.62
CHD3-201ENST00000330494 MMP10P09238 476 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 LLGL1Q15334 1064 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 TBCKQ8TEA7 893 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.2□□□□□ -0.622e-8■■■■□ 21
CHD3-201ENST00000330494 SEPT10Q9P0V9 454 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 RABGAP1Q9Y3P9 1069 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 FAM196BA6NMK8 535 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 CYP2D6P10635 497 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 STAT1P42224 750 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 PIK3CAP42336 1068 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ADAM9Q13443 819 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ERBB4Q15303 1308 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ABCC3O15438 1527 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 GLI2P10070 1586 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 CYP27B1O15528 508 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 HSPA1LP34931 641 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 PHLDB2Q86SQ0 1253 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 CCDC89Q8N998 374 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 NRBP1Q9UHY1 535 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 PCDHA4Q9UN74 947 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 AKT3Q9Y243 479 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ARHGAP6O43182 974 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 CMA1P23946 247 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 NAA35Q5VZE5 725 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 SMC1BQ8NDV3 1235 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 NKIRAS1Q9NYS0 192 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 SAMD15Q9P1V8 674 aa11.2□□□□□ -0.62
CHD3-201ENST00000330494 ACTN4O43707 911 aaKnown RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 MARK3P27448 753 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 MCAMP43121 646 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 TBC1D9BQ66K14 1250 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 MCF2L2Q86YR7 1114 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 IFT20Q8IY31 132 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ANKRD13CQ8N6S4 541 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 NSUN7Q8NE18 718 aaKnown RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 BCORL1Q5H9F3 1711 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 TUBB4AP04350 444 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 SPC25Q9HBM1 224 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ARMCX3Q9UH62 379 aaPredicted RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 ZBTB8OSQ8IWT0 167 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 TTC14Q96N46 770 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 RIOK1Q9BRS2 568 aaKnown RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 CPVLQ9H3G5 476 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ADGRL3Q9HAR2 1447 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ATP10DQ9P241 1426 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ATF7P17544 494 aaPredicted RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 ODR4Q5SWX8 454 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 FBXO18Q8NFZ0 1043 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 ATG3Q9NT62 314 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 SEMA3EO15041 775 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 IFNB1P01574 187 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 MAN1A1P33908 653 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 KRT81Q14533 505 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 TTLL11Q8NHH1 800 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 UHMK1Q8TAS1 419 aaKnown RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 STK10O94804 968 aaKnown RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 ZNF772Q68DY9 489 aaPredicted RBP11.19□□□□□ -0.62
CHD3-201ENST00000330494 AFAP1L1Q8TED9 768 aa11.19□□□□□ -0.62
CHD3-201ENST00000330494 CDC42BPBQ9Y5S2 1711 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 SERPINB13Q9UIV8 391 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 PLEKHA8P1O95397 391 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 STAT2P52630 851 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 OSTNP61366 133 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 CCT6BQ92526 530 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 CNOT6LQ96LI5 555 aaKnown RBP11.18□□□□□ -0.62
CHD3-201ENST00000330494 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.18□□□□□ -0.62
CHD3-201ENST00000330494 AMNQ9BXJ7 453 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 TRPM1Q7Z4N2 1603 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 GNA14O95837 355 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 CCDC110Q8TBZ0 833 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 AMFRQ9UKV5 643 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 CDK12Q9NYV4 1490 aaPredicted RBP11.18□□□□□ -0.62
CHD3-201ENST00000330494 CLNS1AP54105 237 aaKnown RBP11.18□□□□□ -0.62
CHD3-201ENST00000330494 CFAP221Q4G0U5 840 aa11.18□□□□□ -0.62
CHD3-201ENST00000330494 SND1Q7KZF4 910 aaKnown RBP eCLIP11.18□□□□□ -0.62
CHD3-201ENST00000330494 CCDC84Q86UT8 332 aaPredicted RBP11.18□□□□□ -0.62
CHD3-201ENST00000330494 DISC1Q9NRI5 854 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms