RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 C6orf229H3BNL8 230 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 ORC4O43929 436 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 GLI3P10071 1580 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 PBX1P40424 430 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 PTPROQ16827 1216 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 MAP9Q49MG5 647 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 CCDC40Q4G0X9 1142 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 NUP188Q5SRE5 1749 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 ARL6IP4Q66PJ3 421 aaKnown RBP14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 RRAGAQ7L523 313 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 LRRC47Q8N1G4 583 aaKnown RBP14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 TBCKQ8TEA7 893 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 BBXQ8WY36 941 aaPredicted RBP14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 TNFRSF25Q93038 417 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 PIGSQ96S52 555 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 LACRTQ9GZZ8 138 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 TMEM260Q9NX78 707 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 PCDHA6Q9UN73 950 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 PCDHA8Q9Y5H6 950 aa14.39□□□□□ -0.11
HMGCS1-201ENST00000325110 AMPD3Q01432 767 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 CT47A1Q5JQC4 288 aaPredicted RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 RCSD1Q6JBY9 416 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 SECISBP2LQ93073 1101 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 P2RX5Q93086 422 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 COA7Q96BR5 231 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.38□□□□□ -0.112e-12■□□□□ 8.7
HMGCS1-201ENST00000325110 FAM204AQ9H8W3 233 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 PARP4Q9UKK3 1724 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 MYH7P12883 1935 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 BICDL2A1A5D9 508 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 PLEKP08567 350 aaPredicted RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 PCP11498 1178 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 ARHGAP25P42331 645 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 ANKRD40Q6AI12 368 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 CLEC10AQ8IUN9 316 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 FAM114A1Q8IWE2 563 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 LINC00116Q8NCU8 138 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 IFIH1Q9BYX4 1025 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 KANSL2Q9H9L4 492 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 FAM53CQ9NYF3 392 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 PODXL2Q9NZ53 605 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 ZNF142P52746 1687 aaPredicted RBP14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 PLEKHG2Q9H7P9 1386 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 IL17RBQ9NRM6 502 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 SMARCAL1Q9NZC9 954 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 C4AP0C0L4 1744 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 C4BP0C0L5 1744 aa14.38□□□□□ -0.11
HMGCS1-201ENST00000325110 BUB1O43683 1085 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 EEF1GP26641 437 aaKnown RBP14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 SV2BQ7L1I2 683 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 NELFCDQ8IXH7 590 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 REXO1Q8N1G1 1221 aaKnown RBP14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 GJA10Q969M2 543 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 ADAMTSL3P82987 1691 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 GNA11P29992 359 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 IRX5P78411 483 aaPredicted RBP14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 CKAP4Q07065 602 aaKnown RBP14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 TMEM266Q2M3C6 531 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 FBXO33Q7Z6M2 555 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 EHBP1Q8NDI1 1231 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 SNX29Q8TEQ0 813 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 NYXQ9GZU5 481 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 MLXIPQ9HAP2 919 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 ITIH6Q6UXX5 1313 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 POTEMA6NI47 508 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 G3V3G9 751 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 TACC1O75410 805 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 RFC4P35249 363 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 BTDP43251 543 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 SLC7A5Q01650 507 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 GRIK5Q16478 980 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 NAALADL2Q58DX5 795 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 DCAF8Q5TAQ9 597 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 NEK8Q86SG6 692 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 CENPHQ9H3R5 247 aa14.37□□□□□ -0.11
HMGCS1-201ENST00000325110 CYTH3O43739 400 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 UFL1O94874 794 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 IKQ13123 557 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 SF3B3Q15393 1217 aaKnown RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 C12orf60Q5U649 245 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 SND1Q7KZF4 910 aaKnown RBP eCLIP14.36□□□□□ -0.116e-7■■■■□ 19.7
HMGCS1-201ENST00000325110 PTF1AQ7RTS3 328 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 IRF2BP1Q8IU81 584 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 RPGRQ92834 1020 aaKnown RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 ZNF287Q9HBT7 754 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 BAZ2AQ9UIF9 1905 aaKnown RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 RNF40O75150 1001 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 MOCS3O95396 460 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 LDHCP07864 332 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 CCNE1P24864 410 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 TUBB2AQ13885 445 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 NFIXQ14938 502 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 DGKHQ86XP1 1220 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 C8orf37Q96NL8 207 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 TUBB2BQ9BVA1 445 aa14.36□□□□□ -0.11
HMGCS1-201ENST00000325110 REXO2Q9Y3B8 237 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms