RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PFKFB3Q16875 520 aaPredicted RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 DYMQ7RTS9 669 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 BRIP1Q9BX63 1249 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 DCP1AQ9NPI6 582 aaPredicted RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 AGPAT5Q9NUQ2 364 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 RRP15Q9Y3B9 282 aaKnown RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 LGALS16A8MUM7 142 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 TECP42680 631 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 TXKP42681 527 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 SH3RF1Q7Z6J0 888 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 STAG2Q8N3U4 1231 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 RIN2Q8WYP3 895 aaPredicted RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 MMS19Q96T76 1030 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 ATRNO75882 1429 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 ITIH6Q6UXX5 1313 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 CNTNAP5Q8WYK1 1306 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 EEF1GP26641 437 aaKnown RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 EPS15P42566 896 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 ARID5AQ03989 594 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 SND1Q7KZF4 910 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 APTXQ7Z2E3 356 aaKnown RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 FAM84BQ96KN1 310 aaPredicted RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 CNOT6LQ96LI5 555 aaKnown RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 ALS2CR12Q96Q35 445 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 IFIH1Q9BYX4 1025 aaKnown RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 CENPHQ9H3R5 247 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 SLC39A2Q9NP94 309 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 BSDC1Q9NW68 430 aaPredicted RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 PCDHA4Q9UN74 947 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 USP54Q70EL1 1684 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 USP17L3A6NCW0 530 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 USP17L4A6NCW7 530 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 CXCR5P32302 372 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 USP17L1Q7RTZ2 530 aa11.73□□□□□ -0.53
COL3A1-202ENST00000317840 RIOK1Q9BRS2 568 aaKnown RBP11.73□□□□□ -0.53
COL3A1-202ENST00000317840 ZNF185O15231 689 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 HNRNPLLQ8WVV9 542 aaKnown RBP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 NHEJ1Q9H9Q4 299 aaPredicted RBP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 MED4Q9NPJ6 270 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 PMS1P54277 932 aaKnown RBP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 C2orf54Q08AI8 447 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 ARL6IP4Q66PJ3 421 aaKnown RBP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 PDXDC2PQ6P474 469 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 BARGINQ6ZT62 677 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 KRT26Q7Z3Y9 468 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 ARPP21Q9UBL0 812 aaPredicted RBP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA6BA6NDN3 693 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 PLCG1P19174 1290 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 PBX1P40424 430 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 KLK7P49862 253 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 MSANTD4Q8NCY6 345 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 HPS3Q969F9 1004 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 SHISA4Q96DD7 197 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.72□□□□□ -0.53
COL3A1-202ENST00000317840 TMEM60Q9H2L4 133 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 KIF1AQ12756 1690 aa11.72□□□□□ -0.53
COL3A1-202ENST00000317840 LRRIQ3A6PVS8 624 aaPredicted RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 MAP2K7O14733 419 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 PCP11498 1178 aaKnown RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 ARHGAP25P42331 645 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 RNASE9P60153 205 aaKnown RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 DPP8Q6V1X1 898 aaPredicted RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 TXNRD3Q86VQ6 643 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 ADSSL1Q8N142 457 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 FAM76AQ8TAV0 307 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 NUP58Q9BVL2 599 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 LRWD1Q9UFC0 647 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 DUSP10Q9Y6W6 482 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA6CA6NDK9 693 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA6DP0CG33 693 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 RRAGAQ7L523 313 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 SLC44A5Q8NCS7 719 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 SMCR8Q8TEV9 937 aaPredicted RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 NOC3LQ8WTT2 800 aaKnown RBP11.71□□□□□ -0.53
COL3A1-202ENST00000317840 MTRQ99707 1265 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 ATP8A2Q9NTI2 1148 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA6AQ9NYA3 693 aa11.71□□□□□ -0.53
COL3A1-202ENST00000317840 PPARDQ03181 441 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 CCDC40Q4G0X9 1142 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 RBM26Q5T8P6 1007 aaKnown RBP11.71□□□□□ -0.54
COL3A1-202ENST00000317840 KIAA0825Q8IV33 1275 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 P2RX5Q93086 422 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 C6orf50Q9HD87 102 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 TMEM51Q9NW97 253 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 ANAPC4Q9UJX5 808 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 RAB21Q9UL25 225 aa11.71□□□□□ -0.54
COL3A1-202ENST00000317840 SIPA1L3O60292 1781 aaPredicted RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 KLRF2D3W0D1 207 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 KRT18P05783 430 aaKnown RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 FUT2Q10981 343 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 E2F4Q16254 413 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 LACRTQ9GZZ8 138 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 NLRC4Q9NPP4 1024 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 BIN2Q9UBW5 565 aaPredicted RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 FEZ2Q9UHY8 353 aaPredicted RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 SPEF2Q9C093 1822 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 PHRF1Q9P1Y6 1649 aaKnown RBP11.7□□□□□ -0.54
COL3A1-202ENST00000317840 FAM205AQ6ZU69 1335 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 SMCO2A6NFE2 343 aa11.7□□□□□ -0.54
COL3A1-202ENST00000317840 MAGEA1P43355 309 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms