RNA–Protein interactions for RNA: ENST00000289292.11

SHROOM4-201, Transcript of shroom family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM4, Length 6,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-201ENST00000289292 CASP8Q14790 479 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 ZKSCAN8Q15776 578 aaPredicted RBP16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 AP1ARQ63HQ0 302 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 NHEJ1Q9H9Q4 299 aaPredicted RBP16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 ARHGEF10LQ9HCE6 1279 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 PCDHA12Q9UN75 941 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 SNX1Q13596 522 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 TERF2Q15554 542 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 NT5C3AQ9H0P0 336 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 ARMCX3Q9UH62 379 aaPredicted RBP16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 KDM3AQ9Y4C1 1321 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 TROVE2P10155 538 aaKnown RBP eCLIP16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 DIXDC1Q155Q3 683 aa16.82■□□□□ 0.28
SHROOM4-201ENST00000289292 KLRF2D3W0D1 207 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 KIF3CO14782 793 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 PHKG2P15735 406 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 RSAD2Q8WXG1 361 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 PARP3Q9Y6F1 533 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 HIP1RO75146 1068 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 STAG1Q8WVM7 1258 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 TCP11Q8WWU5 503 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 JRKLQ9Y4A0 524 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 ATP10AO60312 1499 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 NNTQ13423 1086 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 ARHGAP24Q8N264 748 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 VTI1AQ96AJ9 217 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 ATP8A1Q9Y2Q0 1164 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 LONP1P36776 959 aaKnown RBP16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 SLCO1A2P46721 670 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 GINS2Q9Y248 185 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 TTLL3Q9Y4R7 772 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 DYNLL1P63167 89 aaKnown RBP16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 IQCDQ96DY2 449 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 PSTPIP2Q9H939 334 aa16.81■□□□□ 0.28
SHROOM4-201ENST00000289292 K7ENM7 598 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 ATP8B1O43520 1251 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 CASP1P29466 404 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 SMCR8Q8TEV9 937 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 POC1B-GALNT4F8VUJ3 575 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 RFC1P35251 1148 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 GBP7Q8N8V2 638 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 GJA10Q969M2 543 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 MLH3Q9UHC1 1453 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 EPHB4P54760 987 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 CYP27A1Q02318 531 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 CYP4A11Q02928 519 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 PHLDB2Q86SQ0 1253 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 SPATS2Q86XZ4 545 aaKnown RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 OSBP2Q969R2 916 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 HOMER3Q9NSC5 361 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 MESDQ14696 234 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 FAM133AQ8N9E0 248 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 CCT6BQ92526 530 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 FOXP1Q9H334 677 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 GAS7O60861 476 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 TOB2Q14106 344 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 ZNF658Q5TYW1 1059 aaPredicted RBP16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 TMEM87AQ8NBN3 555 aa16.8■□□□□ 0.28
SHROOM4-201ENST00000289292 MMP1P03956 469 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 NECTIN1Q15223 517 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 THRAP3Q9Y2W1 955 aaKnown RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 SOS2Q07890 1332 aaPredicted RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 TTC37Q6PGP7 1564 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 ATF2P15336 505 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 SNX16P57768 344 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 ZBTB38Q8NAP3 1195 aaPredicted RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 GSDMBQ8TAX9 411 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 AP1M1Q9BXS5 423 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 TRIM6Q9C030 488 aaPredicted RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 TRIM4Q9C037 500 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 RAB20Q9NX57 234 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 SMIM24O75264 130 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 KMT5BQ4FZB7 885 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 PAGE5Q96GU1 130 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 INTS9Q9NV88 658 aaKnown RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 DDAH1O94760 285 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 CHRNDQ07001 517 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 CCDC197Q8NCU1 140 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 GDAP1Q8TB36 358 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 N4BP2L2Q92802 583 aaPredicted RBP16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 PFDN4Q9NQP4 134 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 ST7Q9NRC1 585 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 RASSF2P50749 326 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 GSDMAQ96QA5 445 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 KIAA1024Q9UPX6 916 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 ZDHHC9Q9Y397 364 aa16.79■□□□□ 0.28
SHROOM4-201ENST00000289292 P2RX5Q93086 422 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 GMNNO75496 209 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 EXOC3L4Q17RC7 722 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 PLA2G4DQ86XP0 818 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 PPM1KQ8N3J5 372 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 CD2APQ9Y5K6 639 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 DLATP10515 647 aaKnown RBP16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 DDX27Q96GQ7 796 aaKnown RBP16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 CCNL1Q9UK58 526 aaPredicted RBP16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 SH2B2O14492 632 aaPredicted RBP16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 H2AFZP0C0S5 128 aa16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 EIF4A3P38919 411 aaKnown RBP16.78■□□□□ 0.28
SHROOM4-201ENST00000289292 H2AFVQ71UI9 128 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms