RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 RAB11FIP4Q86YS3 637 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 PRPF38AQ8NAV1 312 aaKnown RBP28.42■■■□□ 2.14
SSBP4-201ENST00000270061 CHAMP1Q96JM3 812 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 ZNF236Q9UL36 1845 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 H3BQV1 296 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 CDC27P30260 824 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 NTRK3Q16288 839 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 ZNF654Q8IZM8 581 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 TMEM87AQ8NBN3 555 aa28.41■■■□□ 2.14
SSBP4-201ENST00000270061 U2AF1L4Q8WU68 220 aaKnown RBP28.41■■■□□ 2.14
SSBP4-201ENST00000270061 PRPF40AO75400 957 aaKnown RBP28.4■■■□□ 2.14
SSBP4-201ENST00000270061 TRIM32Q13049 653 aa28.4■■■□□ 2.14
SSBP4-201ENST00000270061 SHISA4Q96DD7 197 aa28.4■■■□□ 2.14
SSBP4-201ENST00000270061 PAK6Q9NQU5 681 aaPredicted RBP28.4■■■□□ 2.14
SSBP4-201ENST00000270061 ORC3Q9UBD5 711 aaPredicted RBP28.4■■■□□ 2.14
SSBP4-201ENST00000270061 SLC25A27O95847 323 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 BMP3P12645 472 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 CCL14Q16627 93 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 IFIT1BQ5T764 474 aaKnown RBP28.39■■■□□ 2.14
SSBP4-201ENST00000270061 DEFB118Q96PH6 123 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 ZSCAN16Q9H4T2 348 aaPredicted RBP28.39■■■□□ 2.14
SSBP4-201ENST00000270061 FEM1BQ9UK73 627 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 RPTORQ8N122 1335 aa28.39■■■□□ 2.14
SSBP4-201ENST00000270061 CCDC196A0A1B0GTZ2 297 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 SGPL1O95470 568 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 RXRAP19793 462 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 KLHL40Q2TBA0 621 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 CCDC178Q5BJE1 867 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.39■■■□□ 2.133e-6■■■□□ 16.6
SSBP4-201ENST00000270061 HMX1Q9NP08 348 aaPredicted RBP28.39■■■□□ 2.13
SSBP4-201ENST00000270061 TCP11L1Q9NUJ3 509 aa28.39■■■□□ 2.13
SSBP4-201ENST00000270061 ZNF214Q9UL59 606 aaPredicted RBP28.39■■■□□ 2.13
SSBP4-201ENST00000270061 ISY1Q9ULR0 285 aaKnown RBP28.39■■■□□ 2.13
SSBP4-201ENST00000270061 STAT3P40763 770 aa28.38■■■□□ 2.13
SSBP4-201ENST00000270061 REPS2Q8NFH8 660 aa28.38■■■□□ 2.13
SSBP4-201ENST00000270061 KIFC2Q96AC6 838 aa28.38■■■□□ 2.13
SSBP4-201ENST00000270061 GMCL1Q96IK5 515 aa28.38■■■□□ 2.13
SSBP4-201ENST00000270061 MYL10Q9BUA6 226 aa28.38■■■□□ 2.13
SSBP4-201ENST00000270061 TCHHQ07283 1943 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 STK36Q9NRP7 1315 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 HOXC6P09630 235 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 PRKAR2AP13861 404 aaKnown RBP28.37■■■□□ 2.13
SSBP4-201ENST00000270061 IFNAR1P17181 557 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 ADORA2AP29274 412 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 SLC1A4P43007 532 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 NOVP48745 357 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 RTN1Q16799 776 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 DPP9Q86TI2 863 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 RIOX2Q8IUF8 465 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 FANCBQ8NB91 859 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 ANKS1AQ92625 1134 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 CALM1P0DP23 149 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 CALM2P0DP24 149 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 CALM3P0DP25 149 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 RESTQ13127 1097 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 MAP3K21Q5TCX8 1036 aa28.37■■■□□ 2.13
SSBP4-201ENST00000270061 CTDP1Q9Y5B0 961 aaPredicted RBP28.37■■■□□ 2.13
SSBP4-201ENST00000270061 FOXD4L6Q3SYB3 417 aaPredicted RBP28.36■■■□□ 2.13
SSBP4-201ENST00000270061 FOXD4L3Q6VB84 417 aaPredicted RBP28.36■■■□□ 2.13
SSBP4-201ENST00000270061 CATIPQ7Z7H3 387 aa28.36■■■□□ 2.13
SSBP4-201ENST00000270061 DGKHQ86XP1 1220 aa28.36■■■□□ 2.13
SSBP4-201ENST00000270061 ABRAQ8N0Z2 381 aa28.36■■■□□ 2.13
SSBP4-201ENST00000270061 DDX49Q9Y6V7 483 aaKnown RBP28.36■■■□□ 2.13
SSBP4-201ENST00000270061 PLXNA1Q9UIW2 1896 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 TMEM232C9JQI7 657 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 DDAH1O94760 285 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 FCER1AP12319 257 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 COPB2P35606 906 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 STAT2P52630 851 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 GSE1Q14687 1217 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 FERMT3Q86UX7 667 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 TEX13BQ9BXU2 312 aa28.35■■■□□ 2.13
SSBP4-201ENST00000270061 ZBED4O75132 1171 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CAPN2P17655 700 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 DNM1Q05193 864 aaKnown RBP28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CACNB2Q08289 660 aaPredicted RBP28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CSPP1Q1MSJ5 1256 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CCDC144CPQ8IYA2 1237 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 NPLOC4Q8TAT6 608 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CNPY2Q9Y2B0 182 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 TFRCP02786 760 aaKnown RBP28.34■■■□□ 2.13
SSBP4-201ENST00000270061 TROAPQ12815 778 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 MFSD14CQ5VZR4 134 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 FBXO18Q8NFZ0 1043 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 CHURC1Q8WUH1 139 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 C8orf76Q96K31 380 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 SLC5A4Q9NY91 659 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 FLRT1Q9NZU1 646 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 MTMR7Q9Y216 660 aa28.34■■■□□ 2.13
SSBP4-201ENST00000270061 TOP1P11387 765 aaKnown RBP28.33■■■□□ 2.13
SSBP4-201ENST00000270061 IKQ13123 557 aaPredicted RBP28.33■■■□□ 2.13
SSBP4-201ENST00000270061 SNRNP48Q6IEG0 339 aaKnown RBP28.33■■■□□ 2.13
SSBP4-201ENST00000270061 SLC38A10Q9HBR0 1119 aa28.33■■■□□ 2.13
SSBP4-201ENST00000270061 RCSD1Q6JBY9 416 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 KCTD1Q719H9 257 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 FAM160B2Q86V87 743 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 CPXCR1Q8N123 301 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 TMEM47Q9BQJ4 181 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 CRISPLD2Q9H0B8 497 aa28.32■■■□□ 2.12
SSBP4-201ENST00000270061 RBM28Q9NW13 759 aaKnown RBP28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms