RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 CAPN15O75808 1086 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 ZNF792Q3KQV3 632 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 BRF1Q92994 677 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 LZTS2Q9BRK4 669 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 AGXT2Q9BYV1 514 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 DIS3Q9Y2L1 958 aaKnown RBP19.45■□□□□ 0.7
SDCBP-201ENST00000260130 ZNF236Q9UL36 1845 aa19.45■□□□□ 0.7
SDCBP-201ENST00000260130 DNAJC25-GNG10A0A024R161 153 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 KLF18A0A0U1RQI7 1052 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 ZBTB5O15062 677 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 ZBTB43O43298 467 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 SMARCA1P28370 1054 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 TRIM32Q13049 653 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 USH1GQ495M9 461 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 OLFML2BQ68BL8 750 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 MAML3Q96JK9 1138 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 TMEM106CQ9BVX2 250 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 UPF3BQ9BZI7 483 aaKnown RBP19.44■□□□□ 0.7
SDCBP-201ENST00000260130 A1CFQ9NQ94 594 aaKnown RBP19.44■□□□□ 0.7
SDCBP-201ENST00000260130 BRCA2P51587 3418 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 FBXO11Q86XK2 927 aa19.44■□□□□ 0.7
SDCBP-201ENST00000260130 CCL5P13501 91 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 APOBRQ0VD83 1088 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 MFSD14CQ5VZR4 134 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 HOMER1Q86YM7 354 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 CLEC4DQ8WXI8 215 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 PIGSQ96S52 555 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 SPZ1Q9BXG8 430 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 SLKQ9H2G2 1235 aaPredicted RBP19.43■□□□□ 0.7
SDCBP-201ENST00000260130 PFASO15067 1338 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 PLEKHA8P1O95397 391 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 IGHA2P01877 340 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 MAP3K21Q5TCX8 1036 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 NSMFQ6X4W1 530 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 SRBD1Q8N5C6 995 aaKnown RBP19.43■□□□□ 0.7
SDCBP-201ENST00000260130 IL17RAQ96F46 866 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 AMNQ9BXJ7 453 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 RNF208Q9H0X6 261 aa19.43■□□□□ 0.7
SDCBP-201ENST00000260130 NAP1L2Q9ULW6 460 aaPredicted RBP19.43■□□□□ 0.7
SDCBP-201ENST00000260130 ABCB11O95342 1321 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 NFIBO00712 420 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 PRKAR2AP13861 404 aaKnown RBP19.42■□□□□ 0.7
SDCBP-201ENST00000260130 RCAN1P53805 252 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 CACNB2Q08289 660 aaPredicted RBP19.42■□□□□ 0.7
SDCBP-201ENST00000260130 IFFO2Q5TF58 517 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 UNC93B1Q9H1C4 597 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 RBM28Q9NW13 759 aaKnown RBP19.42■□□□□ 0.7
SDCBP-201ENST00000260130 CYP39A1Q9NYL5 469 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 RPTORQ8N122 1335 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 POTEB2H3BUK9 544 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 CYP2C19P33261 490 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 CMTR1Q8N1G2 835 aaKnown RBP19.42■□□□□ 0.7
SDCBP-201ENST00000260130 HMX1Q9NP08 348 aaPredicted RBP19.42■□□□□ 0.7
SDCBP-201ENST00000260130 PDRG1Q9NUG6 133 aa19.42■□□□□ 0.7
SDCBP-201ENST00000260130 PNMA6FA0A0J9YX94 578 aa19.41■□□□□ 0.7
SDCBP-201ENST00000260130 SOX10P56693 466 aa19.41■□□□□ 0.7
SDCBP-201ENST00000260130 RTN1Q16799 776 aa19.41■□□□□ 0.7
SDCBP-201ENST00000260130 TMTC3Q6ZXV5 915 aa19.41■□□□□ 0.7
SDCBP-201ENST00000260130 RRP36Q96EU6 259 aaKnown RBP19.41■□□□□ 0.7
SDCBP-201ENST00000260130 GOLGA8AA7E2F4 631 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 GOLGA8BA8MQT2 603 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 PPP1R11O60927 126 aaPredicted RBP19.4■□□□□ 0.7
SDCBP-201ENST00000260130 EVCP57679 992 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 TRAF1Q13077 416 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 TOB2Q14106 344 aaPredicted RBP19.4■□□□□ 0.7
SDCBP-201ENST00000260130 FAM133AQ8N9E0 248 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 PIBF1Q8WXW3 757 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 TINF2Q9BSI4 451 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 MRPL11Q9Y3B7 192 aaKnown RBP19.4■□□□□ 0.7
SDCBP-201ENST00000260130 CNTN2Q02246 1040 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 BAATQ14032 418 aaPredicted RBP19.4■□□□□ 0.7
SDCBP-201ENST00000260130 PPP2R5BQ15173 497 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 RNF207Q6ZRF8 634 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 ZNF467Q7Z7K2 595 aaPredicted RBP19.4■□□□□ 0.7
SDCBP-201ENST00000260130 CCDC82Q8N4S0 544 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 RGS22Q8NE09 1264 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 PCDHA1Q9Y5I3 950 aa19.4■□□□□ 0.7
SDCBP-201ENST00000260130 PTPDC1A2A3K4 754 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 METAP2P50579 478 aaKnown RBP eCLIP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 MSL3Q8N5Y2 521 aaKnown RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 C22orf23Q9BZE7 217 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.39■□□□□ 0.698e-21■■■■■ 43.8
SDCBP-201ENST00000260130 PAK6Q9NQU5 681 aaPredicted RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 FAM217BQ9NTX9 383 aaPredicted RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 ZNFX1Q9P2E3 1918 aaKnown RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 POTEFA5A3E0 1075 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 GJB1P08034 283 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 FGD4Q96M96 766 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 MAF1Q9H063 256 aa19.39■□□□□ 0.69
SDCBP-201ENST00000260130 RTN4Q9NQC3 1192 aaKnown RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 SEC63Q9UGP8 760 aaKnown RBP19.39■□□□□ 0.69
SDCBP-201ENST00000260130 CCDC196A0A1B0GTZ2 297 aa19.38■□□□□ 0.69
SDCBP-201ENST00000260130 CDC27P30260 824 aa19.38■□□□□ 0.69
SDCBP-201ENST00000260130 MAMDC4Q6UXC1 1216 aa19.38■□□□□ 0.69
SDCBP-201ENST00000260130 MCF2L2Q86YR7 1114 aa19.38■□□□□ 0.69
SDCBP-201ENST00000260130 SMCHD1A6NHR9 2005 aa19.38■□□□□ 0.69
SDCBP-201ENST00000260130 SOWAHBA6NEL2 793 aa19.37■□□□□ 0.69
SDCBP-201ENST00000260130 PDIA3P30101 505 aaKnown RBP19.37■□□□□ 0.69
SDCBP-201ENST00000260130 CCND3P30281 292 aaPredicted RBP19.37■□□□□ 0.69
SDCBP-201ENST00000260130 ADD1P35611 737 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms