RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PRKAB2O43741 272 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 SRGNP10124 158 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 EZH2Q15910 746 aaKnown RBP15.18■□□□□ 0.02
LDLR-201ENST00000252444 NAP1L3Q99457 506 aaPredicted RBP15.18■□□□□ 0.02
LDLR-201ENST00000252444 NOC4LQ9BVI4 516 aaKnown RBP15.18■□□□□ 0.02
LDLR-201ENST00000252444 A0A1B0GVL5 298 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 GBP2P32456 591 aaPredicted RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 TCP11Q8WWU5 503 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 SRPRBQ9Y5M8 271 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 BMS1Q14692 1282 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 ZRSR2Q15696 482 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 CSGALNACT2Q8N6G5 542 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 PRPF38AQ8NAV1 312 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 UBXN4Q92575 508 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 ADPGKQ9BRR6 497 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 POLRMTO00411 1230 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 USP11P51784 963 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 LIN9Q5TKA1 542 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 MYCT1Q8N699 235 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 PAF1Q8N7H5 531 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 TSKSQ9UJT2 592 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 DISP2A7MBM2 1401 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 AKR1B15C9JRZ8 316 aaPredicted RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 CASP7P55210 303 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 DMP1Q13316 513 aaPredicted RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 SNW1Q13573 536 aaKnown RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 PRR16Q569H4 304 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 HERC4Q5GLZ8 1057 aaPredicted RBP15.17■□□□□ 0.02
LDLR-201ENST00000252444 LRCH2Q5VUJ6 765 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 MAF1Q9H063 256 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 FAM184BQ9ULE4 1060 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 PEAK1Q9H792 1746 aa15.17■□□□□ 0.02
LDLR-201ENST00000252444 CCDC169A6NNP5 214 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 CTNND1O60716 968 aaKnown RBP15.16■□□□□ 0.02
LDLR-201ENST00000252444 STAM2O75886 525 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 PFKFB1P16118 471 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 TMEM47Q9BQJ4 181 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 SYNCQ9H7C4 482 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 LY9Q9HBG7 655 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 CTNND2Q9UQB3 1225 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 FLT1P17948 1338 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 KRT76Q01546 638 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 TRPC3Q13507 836 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 CCDC42Q96M95 316 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 ZDHHC15Q96MV8 337 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 PAGR1Q9BTK6 254 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 LMBRD1Q9NUN5 540 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 ASB14A6NK59 587 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 NR1I2O75469 434 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 INF2Q27J81 1249 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 DPP9Q86TI2 863 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 RTN4Q9NQC3 1192 aaKnown RBP15.16■□□□□ 0.02
LDLR-201ENST00000252444 CGNQ9P2M7 1197 aaKnown RBP15.16■□□□□ 0.02
LDLR-201ENST00000252444 CHMP4BP1P59074 171 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 CDC42EP1Q00587 391 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 KIF5AQ12840 1032 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 ADCK5Q3MIX3 580 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 GPBP1Q86WP2 473 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 KCNB2Q92953 911 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 ZNF577Q9BSK1 485 aa15.16■□□□□ 0.02
LDLR-201ENST00000252444 ZNF277Q9NRM2 450 aaPredicted RBP15.16■□□□□ 0.02
LDLR-201ENST00000252444 ZNF70Q9UC06 446 aaPredicted RBP15.16■□□□□ 0.02
LDLR-201ENST00000252444 KYAT1Q16773 422 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 CALR3Q96L12 384 aaKnown RBP15.15■□□□□ 0.02
LDLR-201ENST00000252444 KIAA1468Q9P260 1216 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 SLC25A27O95847 323 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 GNAT1P11488 350 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 SSR1P43307 286 aaKnown RBP15.15■□□□□ 0.02
LDLR-201ENST00000252444 CYP26C1Q6V0L0 522 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 CEP112Q8N8E3 955 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 MRPL44Q9H9J2 332 aaKnown RBP15.15■□□□□ 0.02
LDLR-201ENST00000252444 DPEP1P16444 411 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 GLG1Q92896 1179 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 PIGSQ96S52 555 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.15■□□□□ 0.02
LDLR-201ENST00000252444 TESPA1A2RU30 521 aaPredicted RBP15.15■□□□□ 0.02
LDLR-201ENST00000252444 ACTN2P35609 894 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 FAM83AQ86UY5 434 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 TMTC1Q8IUR5 882 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 TBC1D10CQ8IV04 446 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 ANO3Q9BYT9 981 aa15.15■□□□□ 0.02
LDLR-201ENST00000252444 TBX3O15119 743 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 GH2P01242 217 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 LCMT1Q9UIC8 334 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 CHMP2AO43633 222 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 PI16Q6UXB8 463 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.14■□□□□ 0.01
LDLR-201ENST00000252444 NEDD9Q14511 834 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 MMRN2Q9H8L6 949 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 NEDD4P46934 1319 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 ESYT2A0FGR8 921 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 USP8P40818 1118 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 LUZP1Q86V48 1076 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 NSUN6Q8TEA1 469 aaKnown RBP15.14■□□□□ 0.01
LDLR-201ENST00000252444 MXD3Q9BW11 206 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 BARHL2Q9NY43 387 aa15.14■□□□□ 0.01
LDLR-201ENST00000252444 IKBKBO14920 756 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 EXOSC10Q01780 885 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 FAM163AQ96GL9 167 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms