RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.15□□□□□ -0.3
SF3B6-201ENST00000233468 GPCPD1Q9NPB8 672 aa13.15□□□□□ -0.3
SF3B6-201ENST00000233468 NR2E3Q9Y5X4 410 aa13.15□□□□□ -0.3
SF3B6-201ENST00000233468 SLC15A5A6NIM6 579 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 SH2B2O14492 632 aaPredicted RBP13.14□□□□□ -0.31
SF3B6-201ENST00000233468 DDAH1O94760 285 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 FCER1AP12319 257 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 ERCC3P19447 782 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 PTPREP23469 700 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 GNAQP50148 359 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 TRAF1Q13077 416 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 SNRNP48Q6IEG0 339 aaKnown RBP13.14□□□□□ -0.31
SF3B6-201ENST00000233468 CPXCR1Q8N123 301 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 CHST13Q8NET6 341 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 CTCFLQ8NI51 663 aaPredicted RBP13.14□□□□□ -0.31
SF3B6-201ENST00000233468 TRIB2Q92519 343 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 CHMP4CQ96CF2 233 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 PORCNQ9H237 461 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 ZNF214Q9UL59 606 aaPredicted RBP13.14□□□□□ -0.31
SF3B6-201ENST00000233468 PRR12Q9ULL5 1215 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 SNX14Q9Y5W7 946 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 SLC12A7Q9Y666 1083 aa13.14□□□□□ -0.31
SF3B6-201ENST00000233468 FRMPD2Q68DX3 1309 aaPredicted RBP13.13□□□□□ -0.31
SF3B6-201ENST00000233468 GREB1LQ9C091 1923 aaPredicted RBP13.13□□□□□ -0.31
SF3B6-201ENST00000233468 DHX16O60231 1041 aaKnown RBP13.13□□□□□ -0.31
SF3B6-201ENST00000233468 HMGCRP04035 888 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 XRCC5P13010 732 aaKnown RBP13.13□□□□□ -0.31
SF3B6-201ENST00000233468 CYP2B6P20813 491 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 ANTXR2P58335 489 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 ANAPC15P60006 121 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 KCTD2Q14681 263 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 REPS2Q8NFH8 660 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 LRCH3Q96II8 777 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 LZTS2Q9BRK4 669 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 RANBP17Q9H2T7 1088 aaKnown RBP13.13□□□□□ -0.31
SF3B6-201ENST00000233468 LY9Q9HBG7 655 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 MYH8P13535 1937 aa13.13□□□□□ -0.31
SF3B6-201ENST00000233468 ICAM1P05362 532 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 GOLGA8HP0CJ92 632 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 SLC16A2P36021 539 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 EXOSC10Q01780 885 aaKnown RBP13.12□□□□□ -0.31
SF3B6-201ENST00000233468 MAP2K5Q13163 448 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 GRB14Q14449 540 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 GRM4Q14833 912 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 MORN1Q5T089 497 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 TTBK2Q6IQ55 1244 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 DPP9Q86TI2 863 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 SGMS1Q86VZ5 419 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 ZNF654Q8IZM8 581 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 NUP133Q8WUM0 1156 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 MMP19Q99542 508 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 TM6SF1Q9BZW5 370 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 UPF2Q9HAU5 1272 aaKnown RBP13.12□□□□□ -0.31
SF3B6-201ENST00000233468 RAVER2Q9HCJ3 691 aaKnown RBP13.12□□□□□ -0.31
SF3B6-201ENST00000233468 ZMYND8Q9ULU4 1186 aaPredicted RBP13.12□□□□□ -0.31
SF3B6-201ENST00000233468 CYP46A1Q9Y6A2 500 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 RPTORQ8N122 1335 aa13.12□□□□□ -0.31
SF3B6-201ENST00000233468 KLRF2D3W0D1 207 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 SYN1P17600 705 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 CASTP20810 708 aaKnown RBP13.11□□□□□ -0.31
SF3B6-201ENST00000233468 SLC4A3P48751 1232 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 RCAN1P53805 252 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 TROAPQ12815 778 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 PPP2R5BQ15173 497 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 ADCK5Q3MIX3 580 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 CCDC174Q6PII3 467 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 NECAB2Q7Z6G3 386 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 C7orf61Q8IZ16 206 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 DDX11Q96FC9 970 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 APBA2Q99767 749 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 ACAD9Q9H845 621 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 HMX1Q9NP08 348 aaPredicted RBP13.11□□□□□ -0.31
SF3B6-201ENST00000233468 CCPG1Q9ULG6 757 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 LAMA4Q16363 1823 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 FRMPD3Q5JV73 1810 aa13.11□□□□□ -0.31
SF3B6-201ENST00000233468 PALM3A6NDB9 673 aaPredicted RBP13.1□□□□□ -0.31
SF3B6-201ENST00000233468 HOXC6P09630 235 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 RPS6KB1P23443 525 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 SMARCA1P28370 1054 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 ADORA2AP29274 412 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 CCL14Q16627 93 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 RUFY3Q7L099 469 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
SF3B6-201ENST00000233468 ANKRD35Q8N283 1001 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 FBXL16Q8N461 479 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 TRERF1Q96PN7 1200 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 UBA5Q9GZZ9 404 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 MAF1Q9H063 256 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 ZSWIM6Q9HCJ5 1215 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 RBM28Q9NW13 759 aaKnown RBP13.1□□□□□ -0.31
SF3B6-201ENST00000233468 MAD2L2Q9UI95 211 aa13.1□□□□□ -0.31
SF3B6-201ENST00000233468 CCDC196A0A1B0GTZ2 297 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 ZBTB43O43298 467 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 ALAS1P13196 640 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 CAPN2P17655 700 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 MAP3K21Q5TCX8 1036 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 MFSD14CQ5VZR4 134 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 Q6ZUG5 572 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 RASGRP2Q7LDG7 609 aa13.09□□□□□ -0.31
SF3B6-201ENST00000233468 ADGRF4Q8IZF3 695 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms