RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 DTHD1Q6ZMT9 781 aa13.86□□□□□ -0.19
NUP88-201ENST00000225696 IPO4Q8TEX9 1081 aaKnown RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 AENQ8WTP8 325 aaKnown RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 DCP1AQ9NPI6 582 aaPredicted RBP13.86□□□□□ -0.19
NUP88-201ENST00000225696 MYH10P35580 1976 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 PSMA7O14818 248 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 NTSR2O95665 410 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 FAM84BQ96KN1 310 aaPredicted RBP13.85□□□□□ -0.19
NUP88-201ENST00000225696 CNOT6LQ96LI5 555 aaKnown RBP13.85□□□□□ -0.19
NUP88-201ENST00000225696 PCMTD1Q96MG8 357 aaPredicted RBP13.85□□□□□ -0.19
NUP88-201ENST00000225696 CRACR2AQ9BSW2 395 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 CPVLQ9H3G5 476 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 POLD4Q9HCU8 107 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 IL17RBQ9NRM6 502 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 SALL4Q9UJQ4 1053 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 PCDHA6Q9UN73 950 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 NIP7Q9Y221 180 aaKnown RBP eCLIP13.85□□□□□ -0.19
NUP88-201ENST00000225696 PCDHA8Q9Y5H6 950 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 AHDC1Q5TGY3 1603 aaPredicted RBP13.85□□□□□ -0.19
NUP88-201ENST00000225696 NCK2O43639 380 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 MOCS3O95396 460 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 PLCG1P19174 1290 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 UBA7P41226 1012 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 ZBED6P86452 979 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 MECOMQ03112 1051 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 KCNB1Q14721 858 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 MAP9Q49MG5 647 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 NFRKBQ6P4R8 1299 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 ZNF662Q6ZS27 426 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 SND1Q7KZF4 910 aaKnown RBP eCLIP13.85□□□□□ -0.19
NUP88-201ENST00000225696 GOLGA6L1Q8N7Z2 621 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 BTG4Q9NY30 223 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 ARHGAP20Q9P2F6 1191 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 MAGEC2Q9UBF1 373 aaPredicted RBP13.85□□□□□ -0.19
NUP88-201ENST00000225696 PCDHA4Q9UN74 947 aa13.85□□□□□ -0.19
NUP88-201ENST00000225696 A0A0G2JS52 829 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 GOLGA6BA6NDN3 693 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 CYTH3O43739 400 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 SHOX2O60902 331 aaPredicted RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 CAMTA2O94983 1202 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 CYLC1P35663 651 aaPredicted RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 CCT5P48643 541 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 IRAK1P51617 712 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 CCDC96Q2M329 555 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 CCDC178Q5BJE1 867 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 DNAJC21Q5F1R6 531 aaKnown RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 ANKRD13CQ8N6S4 541 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 TSEN2Q8NCE0 465 aaKnown RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 SECISBP2LQ93073 1101 aaKnown RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 NSUN4Q96CB9 384 aaKnown RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 PYM1Q9BRP8 204 aaKnown RBP13.84□□□□□ -0.19
NUP88-201ENST00000225696 SNX12Q9UMY4 172 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 FLT1P17948 1338 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 DLEC1Q9Y238 1755 aa13.84□□□□□ -0.19
NUP88-201ENST00000225696 GOLGA6CA6NDK9 693 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 TSPY2A6NKD2 308 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 EXOC5O00471 708 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 ORC4O43929 436 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 USP17L8P0C7I0 530 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 GOLGA6DP0CG33 693 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 VAV2P52735 878 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 ATP2B2Q01814 1243 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 CKAP4Q07065 602 aaKnown RBP13.83□□□□□ -0.19
NUP88-201ENST00000225696 TXNRD1Q16881 649 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 TTC31Q49AM3 519 aaPredicted RBP13.83□□□□□ -0.19
NUP88-201ENST00000225696 P2RX5Q93086 422 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 NOC4LQ9BVI4 516 aaKnown RBP13.83□□□□□ -0.19
NUP88-201ENST00000225696 EFCC1Q9HA90 598 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 FAM207AQ9NSI2 230 aaPredicted RBP13.83□□□□□ -0.19
NUP88-201ENST00000225696 GOLGA6AQ9NYA3 693 aa13.83□□□□□ -0.19
NUP88-201ENST00000225696 ANO9A1A5B4 782 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 NUTM2BA6NNL0 878 aaPredicted RBP13.83□□□□□ -0.2
NUP88-201ENST00000225696 NUTM2EB1AL46 878 aaPredicted RBP13.83□□□□□ -0.2
NUP88-201ENST00000225696 PRDX5P30044 214 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 MTIF2P46199 727 aaKnown RBP13.83□□□□□ -0.2
NUP88-201ENST00000225696 PDE4DQ08499 809 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 KIF5AQ12840 1032 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 C2CD5Q86YS7 1000 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 SPATA4Q8NEY3 305 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 FAM76AQ8TAV0 307 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 ARL8AQ96BM9 186 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 DYNLL2Q96FJ2 89 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 TRIM9Q9C026 710 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 SEMA6BQ9H3T3 888 aa13.83□□□□□ -0.2
NUP88-201ENST00000225696 CCDC194A0A1B0GVG4 234 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 MCM3P25205 808 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 CRKLP46109 303 aaKnown RBP13.82□□□□□ -0.2
NUP88-201ENST00000225696 CCDC170Q8IYT3 715 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 KIAA0895Q8NCT3 520 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 EHBP1Q8NDI1 1231 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 RPGRIP1Q96KN7 1286 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 CCDC42Q96M95 316 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 ZNHIT6Q9NWK9 470 aaKnown RBP13.82□□□□□ -0.2
NUP88-201ENST00000225696 FAM184BQ9ULE4 1060 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 GRIN2DO15399 1336 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 A0A1B0GUL6 1792 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 USP17L3A6NCW0 530 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 USP17L4A6NCW7 530 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 GOLGA8HP0CJ92 632 aa13.82□□□□□ -0.2
NUP88-201ENST00000225696 CCNE1P24864 410 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms